Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iY7	35816	2024-12-27	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.40	0.0	0.11	26.86	0.01	2.168	45.90	16.67	41.7	51.4	6.9	-6.77	2.44	0.30	0.57	1.40	1464	216	24	0	0	0	0	logfile
✔	8oNT	17000	2024-12-27	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.92	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.59	0.0	0.04	15.90	0.00	2.525	7.19	3.04	5.6	94.4	0.0	1.84	0.36	0.63	0.77	1.08	4316	558	3	0	1	1	0	logfile
✔	8SBB	40303	2024-12-27	2023-04-03	3.59	4.04	3.46	3.9	0.016	1.33	0.0	0.07	15.68	0.01	2.146	19.11	3.99	14.9	85.1	0.0	-5.32	0.64	0.80	2.32	3.9	0.003	0.74	0.0	0.04	16.43	0.01	2.177	5.96	2.58	5.5	94.5	0.0	-0.88	1.30	0.65	0.81	2.03	4049	499	3	0	3	0	0	logfile
✔	8SBD	40305	2024-12-28	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.028	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.71	0.0	0.05	15.68	0.00	2.354	22.44	3.92	12.7	87.3	0.0	-5.30	0.74	0.72	0.74	3.76	8864	584	32	0	0	0	4280	logfile
✔	8oN8	16982	2024-12-30	2023-04-01	2.7	2.28	2.63	2.1	0.003	0.65	0.0	0.04	12.58	0.00	2.295	3.01	0.00	1.9	98.1	0.0	1.34	0.72	0.76	4.15	2.1	0.003	0.62	0.0	0.04	15.46	0.00	2.524	4.98	1.58	2.4	97.6	0.0	1.18	0.48	0.81	0.82	3.90	12891	1572	12	0	21	0	0	logfile
✔	8oN7	16981	2024-12-30	2023-04-01	2.5	2.19	2.49	2.0	0.004	0.71	0.0	0.05	13.29	0.00	2.122	3.60	0.21	2.3	97.7	0.0	1.48	0.74	0.78	4.93	2.0	0.003	0.63	0.0	0.04	15.98	0.00	2.536	4.77	2.49	2.9	97.1	0.0	1.67	1.13	0.83	0.84	4.03	13032	1587	18	0	24	0	0	logfile
✔	8SAi	40270	2024-12-28	2023-04-01	3.27	2.43	—	3.2	0.003	0.57	0.0	0.04	13.99	0.00	2.199	6.68	0.10	3.0	97.0	0.0	0.99	0.78	0.78	2.17	3.2	0.003	0.55	1.0	0.04	15.40	0.00	2.352	3.97	1.41	3.6	96.4	0.0	0.96	0.51	0.80	0.83	2.29	9062	1148	6	0	0	0	0	logfile
✔	8oN9	16983	2024-12-30	2023-04-01	2.4	2.27	2.36	2.0	0.005	0.74	0.0	0.05	12.86	0.01	2.175	3.29	0.00	1.4	98.6	0.0	1.48	0.74	0.78	4.34	2.0	0.003	0.66	0.0	0.04	15.73	0.00	2.494	5.01	2.28	2.5	97.5	0.0	1.28	0.52	0.83	0.84	3.93	13014	1587	18	0	24	0	0	logfile
✔	8iXK	35794	2024-12-31	2023-04-01	3.3	3.43	3.25	3.4	0.005	0.71	0.0	0.04	12.45	0.00	2.310	4.15	0.65	2.9	97.1	0.0	4.29	0.77	0.86	2.56	3.4	0.003	0.49	0.0	0.03	15.03	0.00	2.535	5.42	1.50	1.2	98.8	0.0	4.83	0.37	0.76	0.87	2.03	14790	1950	25	0	0	0	0	logfile
✔	8iXL	35795	2024-12-29	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	8oNA	16984	2024-12-30	2023-04-01	3.0	2.29	2.92	2.1	0.004	0.74	0.0	0.05	13.10	0.00	2.029	3.79	0.43	2.5	97.5	0.0	0.59	0.71	0.75	4.09	2.0	0.003	0.65	0.0	0.04	15.72	0.00	2.557	5.32	2.14	2.4	97.6	0.0	1.92	1.16	0.80	0.81	3.51	12900	1581	12	0	18	0	0	logfile
✔	8iXJ	35793	2024-12-30	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.002	0.32	0.0	0.03	13.78	0.00	2.396	2.00	0.74	0.0	100.0	0.0	7.19	1.02	0.65	0.85	0.95	13760	1840	40	0	0	0	0	logfile
✔	8oMU	16977	2024-12-27	2023-03-31	3.43	3.90	3.53	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.230	13.64	0.79	4.1	95.9	0.0	0.64	0.61	0.77	1.27	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.579	11.54	5.89	4.1	95.9	0.0	1.00	1.21	0.61	0.76	1.36	4737	612	2	0	0	0	0	logfile
✔	8iWR	35777	2024-12-27	2023-03-31	3.52	3.68	3.52	3.7	0.004	0.70	0.0	0.04	18.08	0.00	2.149	9.54	0.26	4.3	95.7	0.0	0.89	0.65	0.73	0.62	3.7	0.005	0.75	0.0	0.04	17.69	0.00	2.111	10.54	3.65	7.4	92.6	0.0	0.34	0.55	0.71	0.81	1.48	6871	893	2	0	3	0	0	logfile
✔	8oM9	16971	2024-12-30	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.88	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.7	0.003	0.69	0.0	0.04	19.52	0.00	1.880	17.56	4.29	5.5	94.5	0.0	-0.72	0.47	0.68	0.66	0.50	13314	1548	6	44	4	0	0	logfile
✔	8iWT	35779	2024-12-27	2023-03-31	3.25	3.42	3.26	3.4	0.004	0.63	0.0	0.04	16.20	0.01	1.687	8.30	0.52	2.7	97.0	0.3	2.49	0.66	0.78	2.04	3.4	0.004	0.63	0.0	0.04	16.89	0.01	1.962	8.02	3.40	3.6	96.1	0.3	1.91	1.02	0.68	0.84	2.00	6820	891	2	0	2	0	0	logfile
✔	8oM5	16969	2024-12-30	2023-03-31	3.52	2.68	3.58	2.9	0.007	1.08	1.0	0.08	17.61	0.00	1.974	21.73	1.93	7.9	92.0	0.1	-1.45	0.75	0.80	1.43	2.9	0.004	0.78	0.0	0.05	18.49	0.01	1.985	16.88	4.21	7.1	92.8	0.1	-0.79	1.02	0.70	0.70	1.12	13138	1640	4	0	4	0	0	logfile
✔	8iWU	35780	2024-12-27	2023-03-31	3.31	3.58	3.40	3.5	0.004	1.25	0.0	0.04	16.53	0.00	2.094	7.70	0.13	3.8	96.1	0.1	1.91	0.74	0.80	1.39	3.5	0.006	1.02	1.0	0.04	17.13	0.00	1.911	8.92	4.56	4.6	95.4	0.0	1.45	0.52	0.76	0.86	1.72	6843	893	2	0	2	0	0	logfile
✔	8oMA	16972	2024-12-29	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.92	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.74	0.0	0.05	20.31	0.00	1.866	20.65	3.47	6.5	93.5	0.0	-0.35	1.95	0.64	0.60	0.54	11379	1337	6	34	3	0	0	logfile
✔	8iWW	35781	2024-12-27	2023-03-31	3.71	3.90	3.74	3.9	0.003	1.22	0.0	0.04	14.52	0.00	2.256	9.22	0.13	3.4	96.6	0.0	-1.69	0.70	0.73	1.36	3.8	0.003	1.02	0.0	0.04	17.14	0.00	2.272	11.52	2.09	4.3	95.7	0.0	0.80	1.47	0.75	0.80	1.25	6848	890	2	0	3	0	0	logfile

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