Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iWU	35780	2024-12-27	2023-03-31	3.31	3.58	3.40	3.5	0.004	1.25	0.0	0.04	16.53	0.00	2.094	7.70	0.13	3.8	96.1	0.1	1.91	0.74	0.80	1.39	3.5	0.006	1.02	1.0	0.04	17.13	0.00	1.911	8.92	4.56	4.6	95.4	0.0	1.45	0.52	0.76	0.86	1.72	6843	893	2	0	2	0	0	logfile
✔	8iWR	35777	2024-12-27	2023-03-31	3.52	3.68	3.52	3.7	0.004	0.70	0.0	0.04	18.08	0.00	2.149	9.54	0.26	4.3	95.7	0.0	0.89	0.65	0.73	0.62	3.7	0.005	0.75	0.0	0.04	17.69	0.00	2.111	10.54	3.65	7.4	92.6	0.0	0.34	0.55	0.71	0.81	1.48	6871	893	2	0	3	0	0	logfile
✔	8oM5	16969	2024-12-30	2023-03-31	3.52	2.68	3.58	2.9	0.007	1.08	1.0	0.08	17.61	0.00	1.974	21.73	1.93	7.9	92.0	0.1	-1.45	0.75	0.80	1.43	2.9	0.004	0.78	0.0	0.05	18.49	0.01	1.985	16.88	4.21	7.1	92.8	0.1	-0.79	1.02	0.70	0.70	1.12	13138	1640	4	0	4	0	0	logfile
✔	8oLU	16963	2024-12-27	2023-03-30	2.59	2.36	2.57	2.6	0.018	2.11	67.0	0.10	17.27	0.03	2.180	7.21	5.92	4.0	95.4	0.6	-2.77	0.82	0.89	4.42	2.5	0.005	0.66	0.0	0.05	17.49	0.00	2.498	7.24	2.11	1.8	98.2	0.0	0.97	1.20	0.77	0.86	3.98	48930	6316	30	0	2	0	0	logfile
✔	8iWM	35771	2024-12-27	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.63	0.0	0.04	15.21	0.00	2.616	8.26	4.21	0.7	99.3	0.0	0.39	1.19	0.59	0.77	1.96	1980	271	2	0	1	0	0	logfile
✔	8iWo	35775	2024-12-31	2023-03-30	3.09	3.86	3.23	3.7	0.007	1.11	2.0	0.06	15.58	0.01	2.207	15.84	1.53	3.5	96.5	0.0	-1.69	0.73	0.80	1.87	3.7	0.004	0.68	0.0	0.04	16.73	0.00	2.430	5.54	1.96	3.1	96.9	0.0	2.32	1.62	0.67	0.83	2.19	15118	1912	4	0	2	0	0	logfile
✔	8iWN	35774	2024-12-28	2023-03-30	3.0	3.16	2.99	3.2	0.013	1.22	0.0	0.07	10.55	0.01	2.398	1.24	0.00	6.0	94.0	0.0	-5.96	0.70	0.86	3.84	3.2	0.003	0.62	0.0	0.04	14.20	0.00	2.542	2.81	2.42	4.2	95.8	0.0	-0.74	0.38	0.68	0.86	2.69	8764	1118	4	0	4	0	0	logfile
✔	8oL3	16944	2024-12-27	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.002	0.46	0.0	0.06	16.12	0.00	2.592	10.69	2.00	7.7	92.3	0.0	-0.76	0.92	0.37	0.76	4.57	4970	330	10	0	0	0	2500	logfile
✔	8oL7	16953	2024-12-27	2023-03-30	3.0	3.28	2.45	3.4	0.006	0.81	0.0	0.07	13.04	0.00	2.619	10.11	0.00	3.3	96.7	0.0	-2.92	0.50	0.79	5.15	3.3	0.004	0.66	0.0	0.06	15.60	0.00	2.632	12.26	0.43	4.7	95.3	0.0	-2.71	0.56	0.43	0.80	5.84	2320	320	10	0	0	0	0	logfile
✔	8iWJ	35768	2024-12-28	2023-03-30	3.0	3.23	3.01	3.2	0.010	1.06	0.0	0.06	9.69	0.01	2.363	1.86	0.00	7.8	92.0	0.2	-6.16	0.71	0.86	4.27	3.2	0.003	0.65	0.0	0.04	13.39	0.00	2.207	3.83	1.84	5.2	94.8	0.0	-1.07	1.62	0.62	0.83	2.85	8484	1092	2	0	0	0	0	logfile
✔	8oLo	16960	2024-12-27	2023-03-30	3.5	3.16	3.18	3.4	0.005	0.87	0.0	0.07	11.69	0.01	2.375	9.87	0.00	6.9	93.1	0.0	-3.19	0.37	0.76	5.66	3.2	0.008	0.85	0.0	0.06	17.55	0.00	2.502	11.80	5.42	6.9	93.1	0.0	-3.35	1.83	0.39	0.79	2.69	2330	310	10	0	0	0	0	logfile
✔	8iWP	35776	2024-12-27	2023-03-30	3.59	3.73	3.54	3.7	0.003	0.69	0.0	0.04	16.15	0.00	2.301	8.90	0.39	4.9	95.0	0.1	1.35	0.67	0.72	0.72	3.7	0.004	0.76	0.0	0.04	16.46	0.00	2.296	9.40	3.89	5.7	94.3	0.0	1.40	0.52	0.72	0.80	0.57	6861	896	2	0	1	0	0	logfile
✔	8iWK	35769	2024-12-28	2023-03-30	3.0	3.18	2.97	3.2	0.010	1.10	0.0	0.06	10.00	0.01	2.313	1.92	0.00	9.2	90.8	0.0	-6.57	0.65	0.83	3.72	3.2	0.003	0.66	0.0	0.04	13.92	0.00	2.580	4.53	2.49	6.4	93.6	0.0	-1.26	1.18	0.67	0.85	2.62	8479	1090	3	0	1	0	0	logfile
✔	8oL6	16952	2024-12-27	2023-03-30	3.8	3.75	2.68	3.8	0.004	0.56	0.0	0.05	9.68	0.00	2.255	9.57	0.00	3.4	96.6	0.0	-2.28	0.46	0.86	5.96	3.8	0.004	0.62	0.0	0.05	16.26	0.00	2.567	10.43	9.57	5.9	93.4	0.7	-2.62	1.12	0.45	0.86	4.71	2260	310	10	0	0	0	0	logfile
✔	8oLN	16959	2024-12-27	2023-03-30	3.3	3.38	2.68	3.7	0.002	0.48	0.0	0.04	9.04	0.00	2.271	10.63	2.41	8.2	91.8	0.0	-4.24	0.41	0.82	4.41	3.5	0.004	0.61	0.0	0.05	17.31	0.00	2.558	13.15	7.93	5.3	94.7	0.0	-4.45	2.86	0.39	0.80	3.45	2830	360	10	0	0	0	0	logfile
✔	8oLG	16957	2024-12-27	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	0.92	0.0	0.05	15.70	0.00	2.530	19.49	0.00	17.8	82.2	0.0	-4.69	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8oL5	16949	2024-12-27	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.40	0.0	0.05	15.49	0.00	2.613	3.26	3.04	1.4	98.6	0.0	-1.23	1.92	0.55	0.88	5.40	2260	310	10	0	0	0	0	logfile
✔	8oLQ	16961	2024-12-27	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.5	0.002	0.49	0.0	0.05	14.47	0.00	2.564	3.28	3.20	8.7	91.3	0.0	-2.19	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8oL2	16942	2024-12-27	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.004	0.68	0.0	0.05	15.53	0.00	2.528	2.83	6.96	2.1	94.5	3.4	-3.15	0.45	0.43	0.90	5.78	2260	310	10	0	0	0	0	logfile
✔	8oKX	16933	2024-12-28	2023-03-29	3.51	5.05	3.73	3.8	0.010	0.99	0.0	0.05	16.07	0.01	1.857	12.70	0.42	6.3	93.2	0.5	-1.03	0.63	0.52	0.76	3.8	0.003	0.91	0.0	0.05	17.07	0.00	2.359	13.95	1.97	6.1	93.9	0.0	-0.56	2.69	0.72	0.73	0.75	6399	799	5	0	1	0	0	logfile

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