Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oKR	16930	2024-12-27	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.55	65.0	0.43	29.67	0.04	1.662	155.51	10.71	48.3	41.7	10.0	-7.71	2.19	0.63	0.89	1.74	1608	168	24	0	0	0	0	logfile
✔	8oKX	16933	2024-12-28	2023-03-29	3.51	5.05	3.73	3.8	0.010	0.99	0.0	0.05	16.07	0.01	1.857	12.70	0.42	6.3	93.2	0.5	-1.03	0.63	0.52	0.76	3.8	0.003	0.91	0.0	0.05	17.07	0.00	2.359	13.95	1.97	6.1	93.9	0.0	-0.56	2.69	0.72	0.73	0.75	6399	799	5	0	1	0	0	logfile
✔	8iW4	35762	2024-12-28	2023-03-29	3.49	2.95	3.34	3.3	0.003	0.81	2.0	0.06	14.91	0.00	2.143	9.81	1.39	4.6	95.4	0.0	-0.63	0.58	0.74	1.89	3.3	0.002	0.51	0.0	0.04	16.09	0.00	2.529	4.55	2.14	3.2	96.8	0.0	0.31	0.97	0.63	0.81	1.41	7900	1045	6	0	1	0	0	logfile
✔	8iW1	35761	2024-12-28	2023-03-29	3.4	2.38	3.19	2.2	0.007	0.86	1.0	0.06	15.68	0.01	2.179	10.19	0.59	5.6	94.4	0.0	-1.82	0.77	0.71	1.64	2.2	0.002	0.61	0.0	0.04	16.62	0.00	2.493	5.43	3.07	3.9	96.1	0.0	0.02	0.54	0.76	0.75	2.07	8327	1107	5	0	0	0	0	logfile
✔	8iWE	35765	2024-12-27	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.7	0.002	0.59	0.0	0.04	15.53	0.00	2.644	2.98	1.42	3.4	96.6	0.0	1.66	1.01	0.62	0.85	2.29	2236	296	2	0	1	0	0	logfile
✔	8iW9	35764	2024-12-29	2023-03-29	3.08	3.58	2.85	3.3	0.003	0.66	1.0	0.05	14.65	0.00	2.168	8.27	0.61	4.4	95.6	0.0	0.21	0.78	0.88	3.16	3.3	0.003	0.58	0.0	0.04	15.07	0.00	2.347	4.13	2.56	3.7	96.3	0.0	1.16	0.38	0.79	0.89	3.02	9693	1293	6	0	0	0	0	logfile
✔	8S9P	40241	2024-12-28	2023-03-29	3.8	4.16	3.92	4.0	0.005	0.82	0.0	0.05	17.16	0.01	2.024	21.44	1.88	9.3	90.5	0.2	-2.07	0.80	0.78	1.62	4.0	0.004	0.81	0.0	0.05	17.24	0.01	2.462	16.20	5.14	8.4	91.6	0.0	-1.92	1.28	0.80	0.78	1.36	9288	1189	3	0	0	0	0	logfile
✔	8iVQ	35759	2024-12-26	2023-03-28	3.6	3.71	3.56	3.6	0.005	1.00	0.0	0.05	13.29	0.01	2.234	5.02	0.00	1.9	98.1	0.0	-1.01	0.73	0.69	1.08	3.6	0.003	0.64	0.0	0.04	15.02	0.00	2.566	8.45	1.32	2.4	97.6	0.0	1.56	1.54	0.78	0.78	1.05	41900	5842	2	0	0	0	0	logfile
✔	8S9G	40240	2024-12-28	2023-03-28	3.0	3.31	3.00	3.3	0.010	1.29	0.0	0.08	11.61	0.00	2.064	5.11	1.22	2.2	97.6	0.2	-0.22	0.58	0.62	3.80	3.3	0.003	0.64	0.0	0.04	13.13	0.00	2.486	6.84	2.44	1.7	98.3	0.0	0.62	0.53	0.60	0.67	3.41	7004	986	7	0	10	0	0	logfile
✔	8oKD	16926	2024-12-28	2023-03-28	3.1	3.30	3.12	3.3	0.003	0.51	0.0	0.03	21.86	0.00	2.207	7.88	0.39	6.5	93.5	0.0	-0.76	0.56	0.62	2.28	3.2	0.002	0.52	0.0	0.03	21.60	0.00	2.541	3.94	3.12	4.7	95.3	0.0	-0.66	0.99	0.71	0.78	1.64	7748	582	4	140	0	0	0	logfile
✔	8S92	40235	2024-12-30	2023-03-27	4.06	4.32	4.09	4.3	0.004	0.68	0.0	0.04	14.72	0.01	2.043	6.52	0.00	13.5	86.1	0.4	-2.24	0.74	0.80	—	4.3	0.004	0.67	0.0	0.05	14.91	0.01	2.408	6.20	0.14	14.9	84.7	0.5	-2.15	0.39	0.76	0.81	—	12714	1590	6	0	0	0	0	logfile
✔	8GMQ	40230	2024-12-31	2023-03-27	3.36	3.98	3.52	3.9	0.008	0.96	0.0	0.04	16.90	0.00	2.025	20.18	0.00	10.0	90.0	0.0	-5.10	0.68	0.85	3.07	3.8	0.003	0.71	0.0	0.04	17.17	0.00	2.566	5.16	3.80	7.2	92.8	0.0	0.11	0.50	0.64	0.82	2.56	14600	1872	16	0	8	0	0	logfile
✔	8GMR	40231	2024-12-30	2023-03-27	3.76	4.01	3.82	4.0	0.006	1.18	0.0	0.04	17.02	0.01	1.574	20.59	0.00	12.6	87.0	0.5	-5.54	0.62	0.81	3.92	4.0	0.003	0.82	0.0	0.04	17.02	0.01	2.593	4.46	2.67	9.9	90.1	0.0	-0.58	0.56	0.61	0.80	1.44	12472	1712	16	0	8	0	0	logfile
✔	8S94	40236	2024-12-31	2023-03-27	3.94	4.20	4.00	4.2	0.003	0.75	0.0	0.04	16.60	0.00	2.192	6.50	0.11	9.3	90.1	0.5	-2.07	0.76	0.84	1.28	4.2	0.003	0.71	0.0	0.04	17.55	0.00	1.983	4.03	2.94	9.1	90.5	0.4	-1.19	0.35	0.76	0.84	1.18	16305	2079	12	0	12	0	0	logfile
✔	8GMP	40229	2024-12-31	2023-03-27	2.8	3.00	2.80	3.0	0.006	1.09	0.0	0.05	17.18	0.01	2.034	12.47	2.96	4.8	95.2	0.0	-6.76	0.65	0.82	2.44	3.0	0.003	0.66	0.0	0.04	17.96	0.01	2.615	3.45	1.04	4.7	95.3	0.0	0.61	0.56	0.61	0.81	2.96	13656	1728	16	0	8	0	0	logfile
✔	8iUX	35729	2024-12-29	2023-03-25	3.1	3.34	3.14	3.3	0.006	0.94	0.0	0.06	11.60	0.01	1.625	4.98	0.49	4.6	95.4	0.0	-4.55	0.67	0.63	0.89	3.3	0.004	0.69	0.0	0.05	16.04	0.00	2.420	3.73	3.58	3.5	96.5	0.0	-0.70	1.77	0.80	0.85	3.04	11472	1452	6	0	9	0	0	logfile
✔	8iV0	35735	2024-12-31	2023-03-25	2.9	3.28	2.96	3.1	0.007	1.23	0.0	0.07	13.35	0.01	0.958	26.98	0.66	10.8	89.0	0.1	-5.21	0.58	0.39	0.36	3.2	0.004	0.94	1.0	0.05	17.11	0.01	2.167	19.50	4.49	8.3	91.7	0.0	-3.64	1.38	0.70	0.63	1.09	16701	2130	12	0	9	0	0	logfile
✔	8iUZ	35734	2024-12-31	2023-03-25	3.0	3.34	3.11	3.3	0.010	1.34	0.0	0.07	12.69	0.01	1.257	8.63	0.99	12.2	87.8	0.0	-4.45	0.60	0.49	0.36	3.2	0.003	0.75	0.0	0.04	15.99	0.00	1.366	8.05	2.85	4.8	95.2	0.0	-1.83	1.27	0.68	0.67	1.05	16692	2127	12	0	9	0	0	logfile
✔	8iUY	35733	2024-12-31	2023-03-25	2.9	3.19	2.93	3.2	0.010	1.42	0.0	0.07	13.23	0.01	0.727	8.86	1.15	11.6	88.4	0.0	-3.89	0.60	0.58	1.69	3.1	0.004	0.92	0.0	0.05	16.41	0.01	1.203	12.04	3.13	5.7	94.3	0.0	-1.97	1.04	0.63	0.64	1.31	16755	2127	12	0	9	0	0	logfile
✘	8oJ7	16907	2024-12-30	2023-03-24	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12026	1355	5	67	3	0	0	logfile

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