Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iUM	35726	2024-12-29	2023-03-24	3.14	3.27	3.01	3.3	0.005	0.67	1.0	0.05	8.23	0.00	2.262	6.27	0.28	2.2	97.8	0.1	-0.94	0.51	0.69	1.95	3.3	0.002	0.53	0.0	0.04	13.55	0.00	2.424	4.95	2.21	1.9	98.1	0.0	1.45	0.81	0.65	0.86	3.16	9955	1270	7	0	1	0	0	logfile
✔	8iUo	35728	2024-12-31	2023-03-24	3.96	4.36	3.95	4.1	0.008	0.74	0.0	0.04	16.37	0.00	2.141	3.20	2.19	7.8	92.2	0.0	-2.44	0.61	0.83	1.79	4.0	0.003	0.69	0.0	0.04	17.74	0.00	2.475	6.16	1.40	4.2	95.8	0.0	0.65	2.06	0.62	0.86	1.29	14785	1810	6	35	0	0	0	logfile
✔	8iUE	35719	2024-12-29	2023-03-24	4.1	3.69	4.12	3.5	0.003	0.49	0.0	0.04	12.74	0.00	1.734	9.57	0.00	2.5	97.5	0.0	-1.72	0.72	0.71	—	3.5	0.003	0.61	0.0	0.04	14.87	0.00	2.034	9.00	0.02	4.1	95.9	0.0	-0.01	0.84	0.74	0.77	—	57927	6871	32	144	10	0	0	logfile
✘	8oJ7	16907	2024-12-30	2023-03-24	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12026	1355	5	67	3	0	0	logfile
✔	8iUL	35725	2024-12-28	2023-03-24	2.78	2.69	2.88	3.1	0.006	0.66	1.0	0.06	9.74	0.01	2.116	6.02	0.61	1.4	98.6	0.0	-1.10	0.58	0.73	2.87	3.1	0.003	0.60	0.0	0.04	15.75	0.00	2.468	5.79	2.14	2.3	97.7	0.0	1.41	1.17	0.61	0.84	2.81	9016	1147	6	0	1	0	0	logfile
✔	8iUK	35724	2024-12-29	2023-03-24	2.67	2.43	2.73	2.8	0.004	0.52	0.0	0.04	8.04	0.00	2.280	5.66	0.37	0.9	99.1	0.0	-0.68	0.51	0.68	1.75	2.4	0.003	0.60	0.0	0.04	16.32	0.00	2.397	5.86	3.69	2.0	98.0	0.0	1.33	1.93	0.61	0.86	3.24	9951	1270	7	0	1	0	0	logfile
✔	8oJ6	16906	2024-12-29	2023-03-24	2.41	2.16	—	2.5	0.009	1.35	1.0	0.08	17.11	0.01	2.137	5.20	0.09	3.1	96.9	0.0	-1.01	0.87	0.86	4.81	2.5	0.004	0.62	0.0	0.04	18.74	0.00	2.452	6.52	1.52	2.2	97.7	0.1	0.46	1.18	0.85	0.83	3.66	11650	1351	5	51	2	4	0	logfile
✘	8oJD	16912	2024-12-28	2023-03-24	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8674	976	5	45	2	0	0	logfile
✔	8iU0	35713	2024-12-28	2023-03-23	2.66	2.91	2.65	2.9	0.014	1.60	0.0	0.08	18.62	0.02	2.258	6.64	0.90	3.6	96.4	0.0	-1.94	0.54	0.80	5.22	2.9	0.004	0.62	0.0	0.04	15.96	0.00	2.540	3.42	1.20	1.2	98.8	0.0	2.49	0.91	0.66	0.86	4.48	7062	765	6	0	45	78	0	logfile
✔	8oiX	16901	2024-12-27	2023-03-23	2.89	2.92	2.87	3.0	0.004	0.61	0.0	0.05	13.46	0.01	2.098	11.45	0.91	2.3	97.7	0.0	-0.02	0.68	0.87	4.39	3.0	0.004	0.63	0.0	0.04	16.72	0.00	2.453	15.28	1.73	1.9	98.1	0.0	0.58	0.83	0.68	0.87	3.65	47786	6150	32	0	4	0	0	logfile
✔	8iTY	35712	2024-12-29	2023-03-23	3.9	4.36	3.99	3.2	0.003	1.24	3.0	0.06	16.23	0.00	1.615	11.98	0.66	3.9	95.9	0.2	-0.59	0.85	0.80	1.17	3.2	0.005	0.79	0.0	0.08	17.40	0.00	1.952	11.84	0.88	4.6	95.3	0.0	-0.06	0.57	0.86	0.83	1.00	57140	6721	32	164	9	0	0	logfile
✔	8GLU	40218	2024-12-30	2023-03-23	3.57	3.90	3.54	3.8	0.003	0.56	0.0	0.04	15.70	0.00	2.053	7.60	0.00	4.7	95.3	0.0	-0.89	0.70	0.75	1.26	3.8	0.005	0.67	0.0	0.04	17.00	0.00	1.891	7.89	1.90	6.2	93.8	0.0	-0.80	0.46	0.71	0.77	1.38	12338	1533	8	0	7	0	0	logfile
✔	8oJ4	16904	2024-12-27	2023-03-23	4.35	4.31	4.08	4.2	0.004	0.82	0.0	0.05	13.75	0.00	2.193	8.14	0.26	15.9	83.9	0.2	-4.77	0.79	0.84	—	4.2	0.003	0.78	0.0	0.04	13.79	0.00	2.502	5.80	0.26	9.1	90.9	0.0	-2.22	1.04	0.79	0.84	—	6983	894	7	0	0	0	0	logfile
✔	8iU2	35714	2024-12-28	2023-03-23	3.35	3.66	3.45	3.7	0.012	1.19	0.0	0.07	10.94	0.01	2.299	6.27	1.64	6.6	93.3	0.1	-2.77	0.65	0.83	3.65	3.6	0.003	0.63	0.0	0.04	14.95	0.00	2.597	5.46	2.62	2.7	97.3	0.0	-0.17	0.69	0.66	0.85	2.61	8734	1137	6	0	1	0	0	logfile
✔	8iTM	35707	2024-12-28	2023-03-22	3.13	3.36	3.13	3.4	0.004	0.61	0.0	0.04	14.14	0.00	2.218	9.97	0.00	4.4	95.6	0.0	0.04	0.63	0.77	1.91	3.4	0.003	0.57	0.0	0.04	16.07	0.00	2.584	6.88	2.99	3.3	96.7	0.0	0.72	2.17	0.66	0.81	1.46	7905	1035	5	0	0	0	0	logfile
✔	8iTF	35705	2024-12-28	2023-03-22	3.46	2.33	3.36	2.1	0.005	0.64	0.0	0.05	14.17	0.00	2.250	5.05	0.95	3.4	96.6	0.0	-0.32	0.77	0.78	2.35	2.2	0.004	0.62	0.0	0.04	15.96	0.00	2.523	4.24	2.73	4.7	95.3	0.0	0.27	0.93	0.78	0.81	2.53	9551	1279	7	0	1	0	0	logfile
✔	8iTL	35706	2024-12-28	2023-03-22	3.23	3.44	3.22	3.5	0.004	0.61	0.0	0.04	14.37	0.00	1.862	9.42	0.00	4.1	95.9	0.0	-0.13	0.62	0.76	2.50	3.5	0.003	0.58	0.0	0.04	16.51	0.00	2.485	5.38	2.34	2.7	97.3	0.0	0.47	0.38	0.65	0.79	2.24	7954	1035	5	0	0	0	0	logfile
✔	8oi8	16888	2024-12-31	2023-03-22	2.28	2.38	2.21	2.3	0.004	0.58	0.0	0.04	12.07	0.00	1.798	3.42	0.65	1.4	98.6	0.0	-1.50	0.72	0.87	5.56	2.3	0.005	0.68	0.0	0.05	15.09	0.00	1.820	4.16	2.55	0.8	99.2	0.0	1.95	0.84	0.74	0.91	5.53	14895	1815	15	0	10	585	0	logfile
✔	8oiD	16889	2024-12-31	2023-03-22	2.3	2.37	2.20	2.3	0.004	0.61	0.0	0.04	13.01	0.00	1.840	4.07	0.96	3.8	96.2	0.0	-0.64	0.73	0.87	5.49	2.3	0.003	0.62	0.0	0.04	15.98	0.00	1.923	4.56	1.41	1.0	99.0	0.0	2.11	1.08	0.74	0.89	4.91	15206	1850	15	0	10	616	0	logfile
✔	8oii	16892	2024-12-30	2023-03-22	2.84	3.49	2.97	3.3	0.005	0.53	0.0	0.04	12.89	0.00	2.213	9.96	0.00	2.6	97.4	0.0	0.01	0.87	0.85	5.64	3.3	0.003	0.62	0.0	0.04	15.42	0.00	2.472	8.31	0.92	2.4	97.6	0.0	0.61	0.60	0.84	0.87	4.47	14064	1800	2	0	0	0	0	logfile

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