Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oi6	16887	2024-12-30	2023-03-22	3.59	3.91	3.62	3.8	0.005	0.64	0.0	0.04	16.97	0.00	1.808	7.71	0.24	1.8	98.1	0.1	0.35	0.77	0.84	1.96	3.8	0.003	0.62	0.0	0.04	16.54	0.00	1.983	8.06	1.63	1.9	98.0	0.1	0.73	0.37	0.77	0.84	1.76	11573	1464	14	0	11	0	0	logfile
✔	8oiF	16891	2024-12-27	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.002	0.58	0.0	0.04	14.24	0.00	1.174	5.11	1.82	5.4	94.6	0.0	0.04	0.85	0.75	0.81	2.57	6589	934	4	0	1	0	0	logfile
✔	8iSY	35700	2024-12-28	2023-03-21	3.27	4.45	3.37	4.0	0.004	0.60	0.0	0.05	12.79	0.00	2.047	6.28	0.00	2.9	97.0	0.1	0.64	0.79	0.69	4.36	4.0	0.003	0.55	0.0	0.04	13.57	0.00	2.585	6.72	0.81	2.6	97.4	0.0	1.55	0.47	0.77	0.75	3.79	7877	957	2	0	0	0	0	logfile
✔	8iSS	35694	2024-12-28	2023-03-21	3.19	3.41	3.22	3.5	0.003	0.51	0.0	0.04	20.03	0.00	2.026	15.69	0.39	6.0	94.0	0.0	-1.16	0.64	0.77	2.33	3.5	0.003	0.56	0.0	0.04	20.24	0.00	2.053	8.32	2.75	4.9	95.1	0.0	0.15	0.41	0.64	0.76	1.73	8807	889	6	80	1	0	0	logfile
✔	8iSZ	35701	2024-12-28	2023-03-21	3.27	4.42	3.33	4.2	0.004	0.85	0.0	0.06	20.89	0.01	1.918	9.90	0.12	6.8	93.2	0.0	-2.32	0.78	0.62	0.36	4.2	0.004	0.84	0.0	0.05	20.80	0.01	2.150	17.13	2.80	6.1	93.9	0.0	-1.47	1.59	0.82	0.75	0.96	8461	915	4	45	0	0	0	logfile
✔	8oHS	16884	2024-12-30	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.004	0.70	0.0	0.04	13.60	0.00	2.181	6.08	0.07	1.9	98.1	0.0	1.11	2.07	0.51	0.87	—	13335	1758	9	0	0	0	0	logfile
✔	8oH9	16879	2024-12-29	2023-03-20	3.2	3.43	3.31	3.4	0.009	1.00	3.0	0.05	15.70	0.01	1.586	6.68	0.41	3.8	95.9	0.4	-0.54	0.79	0.82	1.93	3.4	0.002	0.62	0.0	0.04	16.05	0.00	2.462	5.97	1.54	3.0	96.8	0.2	0.57	0.39	0.80	0.87	1.45	58132	7624	24	0	56	0	0	logfile
✔	8iSi	35691	2024-12-30	2023-03-20	3.77	3.93	3.51	3.8	0.003	0.61	0.0	0.04	14.57	0.00	2.128	7.63	0.07	3.9	96.1	0.0	1.00	0.79	0.79	1.47	3.8	0.003	0.62	0.0	0.04	15.85	0.00	2.534	6.34	2.14	3.6	96.4	0.0	0.83	0.43	0.76	0.73	1.33	13095	1675	2	0	0	0	0	logfile
✔	8iSK	35693	2024-12-30	2023-03-20	3.3	3.77	3.43	3.7	0.004	0.69	0.0	0.04	16.32	0.02	2.116	10.64	0.14	4.1	95.9	0.0	0.41	0.73	0.78	1.81	3.7	0.003	0.66	0.0	0.04	16.74	0.00	2.428	6.77	2.22	3.7	96.3	0.1	0.69	0.40	0.73	0.81	1.46	13273	1693	4	0	2	0	0	logfile
✔	8oH2	16876	2024-12-27	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8iSJ	35692	2024-12-30	2023-03-20	3.0	3.36	3.18	3.4	0.004	0.72	0.0	0.05	16.09	0.01	2.173	9.88	0.20	5.0	95.0	0.1	0.13	0.67	0.78	1.89	3.3	0.003	0.66	0.0	0.04	16.68	0.00	2.490	6.94	2.29	4.8	95.0	0.1	0.30	1.75	0.66	0.81	2.02	13533	1716	4	0	2	0	0	logfile
✔	8oH5	16878	2024-12-29	2023-03-20	3.0	3.22	3.12	3.2	0.007	0.90	0.0	0.05	16.08	0.01	2.190	6.12	0.52	4.4	95.3	0.3	-0.48	0.74	0.83	2.30	3.2	0.004	0.65	0.0	0.05	16.68	0.00	2.325	6.10	2.82	4.4	95.5	0.2	0.44	0.37	0.75	0.89	2.14	58624	7624	24	0	68	0	0	logfile
✔	8GKH	40184	2024-12-28	2023-03-19	2.7	2.25	2.72	2.0	0.002	1.27	0.0	0.10	22.53	0.00	1.881	5.49	0.00	1.2	98.8	0.0	3.05	0.74	0.70	2.48	2.0	0.004	0.65	0.0	0.04	22.70	0.00	1.867	8.23	2.21	1.3	98.7	0.0	0.99	0.54	0.76	0.74	2.11	7570	600	7	125	3	3	0	logfile
✔	8iRP	35682	2024-12-31	2023-03-19	2.8	2.82	2.91	3.0	0.004	0.61	0.0	0.04	13.36	0.00	1.950	7.68	0.00	4.1	95.9	0.0	1.19	0.62	0.86	3.83	3.0	0.004	0.56	0.0	0.04	14.40	0.00	2.371	4.87	0.70	4.3	95.7	0.0	1.18	0.90	0.60	0.87	3.71	16350	1080	8	0	6	2	8208	logfile
✔	8iRN	35680	2024-12-31	2023-03-19	2.7	2.91	2.65	2.9	0.004	0.59	0.0	0.04	13.27	0.00	1.906	7.43	0.23	3.9	96.1	0.0	1.56	0.64	0.87	4.09	2.9	0.004	0.58	0.0	0.04	14.17	0.00	2.413	4.08	0.35	3.2	96.7	0.1	1.76	0.94	0.60	0.87	3.75	16352	1080	8	0	6	2	8208	logfile
✔	8iRM	35679	2024-12-28	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.52	0.00	2.441	21.47	1.52	3.1	96.9	0.0	2.58	1.25	0.64	0.89	3.70	8138	1080	8	2	4	2	8	logfile
✔	8iRo	35681	2024-12-31	2023-03-19	2.7	2.42	2.75	2.8	0.006	1.09	0.0	0.04	13.58	0.00	1.997	9.68	0.00	4.1	95.9	0.0	0.75	0.61	0.86	4.61	2.8	0.004	1.01	0.0	0.04	14.25	0.00	2.113	5.60	0.70	3.7	96.1	0.2	1.07	0.35	0.59	0.86	4.04	16350	1080	8	0	6	2	8208	logfile
✔	8iRL	35678	2024-12-28	2023-03-19	2.7	2.78	2.75	2.9	0.007	0.68	0.0	0.05	12.79	0.01	2.014	3.36	0.00	2.4	97.6	0.0	0.48	0.67	0.88	3.54	2.9	0.003	0.55	0.0	0.04	14.58	0.00	2.622	2.14	0.82	2.7	97.3	0.0	2.09	0.34	0.66	0.89	2.42	8108	1080	4	0	4	0	0	logfile
✔	8oFY	16863	2024-12-28	2023-03-17	3.7	3.51	3.49	3.6	0.009	1.51	0.0	0.07	15.13	0.01	2.159	4.79	2.21	3.7	95.9	0.4	-0.53	0.34	0.62	4.66	3.6	0.003	0.70	0.0	0.04	15.82	0.00	2.623	7.97	1.24	4.2	95.8	0.0	1.49	1.63	0.58	0.79	2.90	7420	976	8	0	4	0	0	logfile
✔	8oFZ	16864	2024-12-28	2023-03-17	3.2	2.79	3.07	3.1	0.010	1.74	0.0	0.07	14.61	0.01	2.314	4.34	5.52	3.3	96.7	0.0	-1.35	0.30	0.60	3.84	3.1	0.003	0.67	0.0	0.04	14.70	0.00	2.527	9.77	1.93	4.4	95.6	0.0	1.71	1.18	0.60	0.82	2.29	7368	976	8	0	8	0	0	logfile

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