Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oFZ	16864	2024-12-28	2023-03-17	3.2	2.79	3.07	3.1	0.010	1.74	0.0	0.07	14.61	0.01	2.314	4.34	5.52	3.3	96.7	0.0	-1.35	0.30	0.60	3.84	3.1	0.003	0.67	0.0	0.04	14.70	0.00	2.527	9.77	1.93	4.4	95.6	0.0	1.71	1.18	0.60	0.82	2.29	7368	976	8	0	8	0	0	logfile
✔	8iQF	35660	2024-12-31	2023-03-16	4.6	4.96	4.72	4.5	0.003	0.63	0.0	0.00	4.93	0.00	1.995	4.78	0.00	4.2	95.8	0.0	-0.27	0.79	0.61	—	4.5	0.004	0.89	0.0	0.00	5.92	0.00	2.332	1.74	0.00	18.1	81.9	0.0	-2.88	3.20	0.82	0.65	—	9072	2268	10	0	0	0	0	logfile
✔	8iQG	35661	2024-12-30	2023-03-16	3.5	4.20	3.54	3.9	0.004	0.57	0.0	0.04	16.21	0.00	2.133	13.95	0.39	5.7	94.3	0.0	-1.06	0.81	0.71	2.17	3.9	0.004	0.75	1.0	0.05	16.20	0.00	2.360	13.46	3.09	4.4	95.6	0.0	-0.93	1.18	0.85	0.79	2.38	8517	1168	5	0	0	0	0	logfile
✔	8GJN	40095	2024-12-27	2023-03-16	3.6	2.60	3.37	3.3	0.013	1.65	0.0	0.09	14.17	0.01	2.431	9.25	1.10	8.7	91.3	0.0	-2.73	0.60	0.68	2.64	2.1	0.003	0.69	0.0	0.04	14.79	0.00	2.598	8.63	2.47	3.6	96.4	0.0	-1.24	1.05	0.60	0.70	3.21	3319	421	4	0	1	0	0	logfile
✔	8iQ4	35657	2024-12-27	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	3.1	0.003	0.52	0.0	0.04	15.47	0.00	2.491	4.07	2.47	4.6	95.4	0.0	1.41	0.18	0.68	0.83	4.59	7080	954	6	0	1	0	0	logfile
✔	8oFF	16859	2024-12-30	2023-03-15	3.4	3.63	3.35	3.7	0.007	0.63	0.0	0.04	27.07	0.01	2.106	5.35	6.72	8.7	91.3	0.0	-2.87	0.74	0.81	1.90	3.7	0.003	0.54	0.0	0.03	27.17	0.00	2.538	4.73	2.74	4.0	96.0	0.0	0.37	0.43	0.76	0.86	1.43	14424	1146	13	289	0	0	0	logfile
✔	8iQ6	35658	2024-12-28	2023-03-15	3.4	3.65	3.40	3.7	0.004	0.59	0.0	0.05	15.45	0.00	2.254	5.62	0.29	4.1	95.9	0.0	1.39	0.75	0.86	2.60	3.7	0.003	0.50	0.0	0.04	15.64	0.00	2.511	4.01	2.63	3.4	96.5	0.1	1.41	1.13	0.74	0.85	2.24	7059	954	6	0	1	0	0	logfile
✔	8iP5	35632	2024-12-30	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.003	0.51	0.0	0.04	15.49	0.00	2.630	5.35	0.35	1.6	98.4	0.0	3.59	0.55	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	8iP3	35630	2024-12-30	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.48	0.0	0.04	13.86	0.00	2.539	5.15	0.85	1.9	98.1	0.0	3.50	0.33	0.71	0.81	3.63	12868	1595	10	0	13	0	0	logfile
✔	8iPQ	35640	2024-12-31	2023-03-14	3.5	3.94	3.69	3.8	0.004	0.77	2.0	0.05	16.07	0.01	2.209	16.79	0.61	7.2	92.7	0.1	0.55	0.64	0.80	0.45	3.8	0.003	0.76	0.0	0.04	16.54	0.01	2.452	9.64	3.28	7.4	92.5	0.1	0.51	0.75	0.64	0.81	0.28	14456	1996	4	0	0	0	0	logfile
✔	8iPR	35641	2024-12-31	2023-03-14	3.0	3.90	2.97	3.4	0.004	0.71	0.0	0.04	16.94	0.00	1.978	11.32	0.13	5.9	94.0	0.1	1.55	0.72	0.81	1.76	3.4	0.003	0.69	0.0	0.04	16.34	0.00	2.045	6.65	1.94	4.8	95.2	0.0	2.22	1.01	0.72	0.88	1.30	14894	2038	8	0	8	0	0	logfile
✔	8iPS	35642	2024-12-28	2023-03-14	3.6	3.89	3.62	3.8	0.005	0.70	0.0	0.04	18.31	0.01	2.221	8.07	0.21	7.6	92.4	0.0	0.29	0.75	0.82	1.33	3.8	0.003	0.62	0.0	0.04	18.92	0.00	2.568	5.34	3.61	6.7	93.2	0.2	0.92	1.04	0.73	0.82	1.31	9071	1161	3	0	1	0	0	logfile
✔	8iP4	35631	2024-12-30	2023-03-14	2.7	3.34	2.82	3.1	0.002	0.44	0.0	0.04	12.81	0.00	2.319	4.04	0.00	1.6	98.4	0.0	3.99	0.73	0.82	2.85	3.1	0.002	0.51	0.0	0.04	15.41	0.00	2.556	6.77	0.98	1.5	98.5	0.0	3.58	0.52	0.72	0.82	3.11	12933	1600	12	0	3	5	0	logfile
✔	8iP6	35633	2024-12-30	2023-03-14	2.9	3.45	3.01	3.2	0.003	0.43	0.0	0.04	13.00	0.00	2.309	2.50	0.00	2.4	97.6	0.0	4.51	0.80	0.85	2.74	3.2	0.003	0.57	0.0	0.04	15.59	0.00	2.485	4.62	1.13	3.2	96.8	0.0	4.26	0.56	0.76	0.82	2.61	12921	1600	6	0	1	0	0	logfile
✔	8oF4	16845	2024-12-30	2023-03-13	2.94	2.89	—	2.9	0.014	1.97	4.0	0.09	25.75	0.03	2.486	0.19	0.58	3.6	96.4	0.0	-0.35	0.81	0.77	3.16	3.0	0.004	0.68	0.0	0.04	26.68	0.00	2.447	9.50	2.10	4.0	96.0	0.0	1.61	1.14	0.83	0.81	1.88	14087	1029	12	290	1	0	0	logfile
✔	8ioW	35627	2024-12-27	2023-03-13	3.2	3.42	3.20	3.4	0.007	0.98	0.0	0.06	14.46	0.01	2.272	8.16	0.22	5.5	94.5	0.0	-2.31	0.69	0.79	3.01	3.4	0.003	0.66	0.0	0.04	15.97	0.00	2.428	11.69	2.39	3.6	96.4	0.0	-1.48	0.90	0.71	0.83	2.72	4178	537	5	0	2	0	0	logfile
✔	8Gi9	40063	2024-12-28	2023-03-13	2.84	3.09	2.82	3.1	0.009	1.11	0.0	0.10	15.91	0.00	1.878	8.12	0.00	4.6	95.4	0.0	1.20	0.57	0.79	4.20	3.1	0.004	0.58	0.0	0.04	14.43	0.00	2.533	6.20	1.31	3.8	96.2	0.0	1.74	0.36	0.61	0.82	2.80	6852	720	6	0	39	45	0	logfile
✔	8Gi1	40059	2024-12-29	2023-03-13	3.65	3.39	3.63	3.8	0.017	1.44	12.0	0.10	11.69	0.01	1.301	10.30	0.86	4.1	95.9	0.0	1.00	0.61	0.69	2.76	3.8	0.004	0.61	0.0	0.04	15.87	0.00	2.339	5.33	2.96	6.1	93.9	0.0	2.04	0.86	0.68	0.79	2.20	9704	1152	8	0	0	0	0	logfile
✔	8Gi0	40056	2024-12-30	2023-03-13	3.5	3.02	3.04	3.0	0.004	0.70	0.0	0.05	14.69	0.01	2.170	3.36	1.14	3.6	96.4	0.0	-0.53	0.65	0.81	3.76	3.1	0.002	0.56	0.0	0.04	15.30	0.00	2.506	2.63	1.97	3.7	96.3	0.0	0.80	0.38	0.71	0.82	2.69	12189	1625	6	0	0	0	0	logfile
✔	8Gi8	40062	2024-12-28	2023-03-13	2.88	3.11	2.77	3.1	0.010	1.16	0.0	0.09	26.08	0.00	1.935	11.74	0.00	2.1	97.9	0.0	1.50	0.58	0.78	3.81	3.1	0.004	0.64	0.0	0.04	19.14	0.00	2.491	13.56	1.62	3.1	96.9	0.0	1.78	0.42	0.62	0.81	2.73	6990	720	6	0	30	45	0	logfile

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