Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8io7	35610	2024-12-30	2023-03-10	2.62	3.42	2.64	3.2	0.005	0.66	0.0	0.04	13.65	0.00	1.959	7.96	0.00	3.0	97.0	0.0	0.55	0.78	0.87	3.93	3.2	0.004	0.55	0.0	0.04	15.54	0.00	1.922	5.42	0.89	2.6	97.4	0.0	1.06	0.42	0.76	0.87	3.67	12876	1612	4	0	4	0	0	logfile
✔	8io6	35609	2024-12-28	2023-03-10	2.68	3.44	2.73	3.1	0.007	0.76	0.0	0.05	14.10	0.01	1.898	8.32	0.00	3.2	96.8	0.0	-0.75	0.85	0.82	4.25	3.1	0.003	0.60	0.0	0.04	15.69	0.00	1.965	5.94	0.56	2.5	97.5	0.0	1.05	2.40	0.82	0.85	3.50	51504	6448	16	0	16	0	0	logfile
✔	8ioA	35613	2024-12-30	2023-03-10	2.63	3.39	2.69	3.2	0.005	0.52	0.0	0.04	10.79	0.00	1.866	9.18	0.53	3.5	96.5	0.0	0.69	0.69	0.89	4.43	3.1	0.004	0.79	1.0	0.06	12.92	0.00	2.037	7.24	0.90	2.7	97.3	0.0	1.44	0.89	0.66	0.87	3.46	12570	1576	4	0	4	0	0	logfile
✔	8oEF	16825	2024-12-30	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✔	8iNZ	35602	2024-12-31	2023-03-10	2.72	3.06	2.83	3.3	0.008	1.26	0.0	0.14	9.23	0.01	1.705	2.13	0.00	1.3	98.7	0.0	-3.47	0.63	0.84	3.64	3.2	0.004	0.57	0.0	0.04	13.20	0.00	2.611	4.63	1.16	2.6	97.4	0.0	1.89	1.36	0.64	0.86	3.30	14920	1860	8	0	4	0	0	logfile
✔	8ioB	35614	2024-12-30	2023-03-10	3.9	4.55	4.36	4.4	0.003	0.76	0.0	0.04	13.28	0.00	2.123	14.19	0.00	6.8	93.0	0.2	-0.13	0.61	0.75	0.63	4.4	0.003	0.80	0.0	0.05	16.31	0.00	2.485	13.69	2.13	7.2	92.5	0.4	-0.02	0.62	0.62	0.76	0.57	13736	1724	4	0	0	0	0	logfile
✔	8io4	35607	2024-12-30	2023-03-10	3.5	3.87	3.59	3.8	0.003	0.75	0.0	0.04	13.37	0.00	2.193	13.54	0.00	5.5	94.1	0.4	-0.87	0.62	0.75	1.62	3.8	0.004	0.78	0.0	0.04	15.91	0.00	2.436	13.00	2.88	6.6	92.7	0.7	-0.77	1.38	0.59	0.79	1.17	13736	1724	4	0	0	0	0	logfile
✔	8io3	35606	2024-12-30	2023-03-10	3.02	3.99	3.07	3.4	0.015	1.00	0.0	0.05	9.71	0.01	2.369	3.20	0.58	3.6	96.4	0.0	-2.78	0.62	0.85	3.11	3.4	0.004	0.58	0.0	0.04	12.67	0.00	2.574	5.27	0.66	3.8	96.2	0.0	2.79	0.74	0.61	0.86	2.64	13620	1728	8	0	4	0	0	logfile
✔	8GHS	40049	2024-12-30	2023-03-10	4.0	3.96	3.96	4.0	0.004	0.70	0.0	0.04	13.67	0.01	1.896	14.61	1.06	3.8	96.1	0.1	1.68	0.51	0.81	—	4.0	0.004	0.74	0.0	0.04	16.57	0.01	2.496	7.62	3.10	3.1	96.9	0.1	1.66	0.80	0.54	0.86	—	13726	1724	12	0	0	0	0	logfile
✔	8iNR	35601	2024-12-28	2023-03-10	2.73	2.91	2.73	3.0	0.012	0.88	1.0	0.06	13.81	0.00	2.153	12.22	0.00	5.5	94.5	0.0	-1.22	0.50	0.66	2.98	3.0	0.004	0.61	0.0	0.04	16.44	0.00	2.259	7.71	3.17	2.8	97.2	0.0	0.49	0.61	0.58	0.76	2.53	7219	912	6	0	1	0	0	logfile
✔	8oE0	16821	2024-12-30	2023-03-10	4.6	5.72	4.72	5.1	0.005	0.93	0.0	0.06	15.09	0.01	2.199	11.71	0.37	3.7	96.3	0.0	-0.82	0.75	0.66	—	5.4	0.003	0.71	0.0	0.04	14.23	0.00	2.489	17.08	0.07	3.6	96.4	0.0	-0.81	1.67	0.77	0.70	—	11980	1500	8	0	8	0	0	logfile
✔	8oE4	16824	2024-12-29	2023-03-10	3.6	3.08	3.52	3.5	0.005	0.85	0.0	0.05	14.53	0.01	2.196	4.88	0.73	2.9	97.1	0.0	-0.38	0.85	0.77	2.05	3.5	0.003	0.69	0.0	0.04	15.01	0.00	2.531	9.49	2.84	3.8	96.2	0.0	-0.10	0.77	0.85	0.78	1.55	9951	1249	7	0	8	0	0	logfile
✔	8oDZ	16820	2024-12-30	2023-03-10	3.6	4.15	3.66	4.0	0.004	0.81	0.0	0.05	15.38	0.01	2.198	7.83	0.22	4.6	95.4	0.0	-0.87	0.70	0.74	1.64	4.0	0.004	0.74	0.0	0.04	16.47	0.01	2.311	13.40	3.63	4.7	95.3	0.0	-0.60	1.07	0.71	0.75	1.33	12100	1516	8	0	9	1	0	logfile
✔	8io5	35608	2024-12-30	2023-03-10	3.8	4.08	3.83	4.0	0.005	0.88	0.0	0.05	13.88	0.01	2.135	20.11	0.00	7.2	92.3	0.5	-1.31	0.64	0.80	1.97	4.0	0.004	0.81	0.0	0.05	16.95	0.00	2.432	13.14	3.91	6.8	92.6	0.6	-0.36	0.58	0.65	0.80	1.73	13736	1724	4	0	0	0	0	logfile
✔	8io0	35603	2024-12-31	2023-03-10	3.19	4.08	3.11	3.7	0.008	0.96	0.0	0.05	12.29	0.01	2.274	4.22	0.27	2.6	97.4	0.0	-2.04	0.68	0.85	2.77	3.7	0.002	0.62	0.0	0.04	14.83	0.00	2.652	5.74	0.81	2.4	97.6	0.0	3.12	2.77	0.68	0.85	1.99	14728	1895	8	0	4	0	0	logfile
✔	8GHK	40046	2024-12-29	2023-03-10	3.47	3.73	3.53	3.7	0.004	0.62	0.0	0.05	17.27	0.00	2.080	7.88	0.45	6.6	93.4	0.0	-2.08	0.72	0.84	2.62	3.7	0.004	0.63	0.0	0.05	16.07	0.00	2.458	5.13	4.11	5.2	94.8	0.0	-1.50	0.73	0.74	0.85	2.50	11671	1556	13	0	17	0	0	logfile
✔	8ioC	35615	2024-12-28	2023-03-10	2.86	3.83	2.92	3.6	0.007	0.73	0.0	0.05	14.04	0.00	2.197	9.59	0.11	5.7	94.3	0.0	-0.98	0.68	0.77	2.67	3.6	0.004	0.88	0.0	0.04	16.51	0.00	2.384	12.16	2.44	4.1	95.9	0.0	0.22	1.35	0.63	0.78	1.88	8223	1041	7	0	1	0	0	logfile
✔	8ioD	35616	2024-12-28	2023-03-10	2.59	2.77	2.63	2.8	0.005	0.80	0.0	0.05	14.07	0.01	2.038	13.91	0.00	5.0	95.0	0.0	-0.83	0.53	0.66	2.35	2.8	0.003	0.59	0.0	0.04	16.48	0.00	2.274	9.11	2.52	3.9	96.1	0.0	0.34	0.40	0.53	0.68	1.74	8061	1023	8	0	3	0	0	logfile
✘	8GHR	40047	2024-12-30	2023-03-10	3.2	3.33	3.23	3.3	0.003	0.58	0.0	0.04	13.78	0.00	1.923	5.03	0.00	3.9	96.1	0.0	-0.17	0.81	0.87	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13864	1716	12	0	20	6	0	logfile
✔	8io8	35611	2024-12-30	2023-03-10	2.17	2.85	2.44	2.5	0.006	0.67	0.0	0.05	11.49	0.00	2.008	5.86	0.08	3.4	96.6	0.0	0.23	0.70	0.91	5.90	2.5	0.002	0.52	0.0	0.04	13.80	0.00	1.877	3.07	0.53	2.9	97.0	0.1	1.39	0.40	0.70	0.91	4.57	12596	1576	4	0	6	0	0	logfile

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