Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GH8	40036	2024-12-27	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.72	0.0	0.04	26.13	0.01	2.527	8.74	0.00	11.6	88.2	0.2	-3.80	1.06	0.51	0.48	—	6991	559	8	136	0	0	0	logfile
✔	8GHB	40039	2024-12-27	2023-03-09	2.76	3.35	2.85	3.2	0.006	0.82	0.0	0.05	13.62	0.01	2.072	4.28	0.00	2.8	97.2	0.0	-1.16	0.77	0.86	3.31	3.2	0.004	0.65	0.0	0.04	16.45	0.00	2.494	8.18	3.34	1.7	98.3	0.0	1.05	0.97	0.79	0.88	2.81	5289	658	2	0	1	0	0	logfile
✔	8GHC	40040	2024-12-29	2023-03-09	2.3	2.71	—	2.6	0.009	0.91	0.0	0.06	12.96	0.01	2.067	5.41	0.09	2.1	97.9	0.0	-1.43	0.75	0.86	4.85	2.6	0.005	0.65	0.0	0.04	15.60	0.00	2.575	7.70	1.06	1.6	98.4	0.0	0.76	0.40	0.77	0.88	4.84	10512	1310	4	0	2	0	0	logfile
✔	8iNB	35595	2024-12-27	2023-03-09	3.1	3.32	3.16	3.3	0.003	0.59	0.0	0.04	22.43	0.01	2.235	7.03	0.24	6.9	93.1	0.0	0.01	0.73	0.81	2.62	3.3	0.003	0.54	0.0	0.04	22.25	0.01	2.440	4.06	2.36	7.1	92.9	0.0	0.89	1.01	0.72	0.84	3.10	5321	498	4	65	0	0	0	logfile
✔	8GH3	40032	2024-12-30	2023-03-09	3.53	4.08	3.59	3.8	0.003	0.69	0.0	0.04	14.15	0.00	2.208	10.62	0.97	7.0	92.3	0.7	-1.06	0.79	0.80	1.56	3.8	0.003	0.67	0.0	0.04	15.42	0.00	2.511	7.59	1.03	6.7	93.1	0.2	-0.22	0.44	0.79	0.80	1.20	13515	1798	6	0	0	0	0	logfile
✔	8GH6	40033	2024-12-29	2023-03-09	3.08	3.04	3.06	3.1	0.006	1.10	0.0	0.06	23.18	0.01	2.128	1.10	0.13	2.0	97.9	0.1	-1.06	0.64	0.81	3.69	3.0	0.004	0.64	0.0	0.04	24.00	0.01	1.905	5.05	2.12	2.9	97.0	0.1	1.05	1.01	0.67	0.85	3.18	10785	898	6	177	4	0	0	logfile
✔	8oDV	16819	2024-12-28	2023-03-09	4.7	4.86	4.41	4.7	0.007	1.10	0.0	0.05	14.06	0.01	2.192	25.76	0.00	4.6	95.4	0.0	-4.04	0.71	0.79	—	4.7	0.003	0.76	0.0	0.04	14.07	0.00	2.383	9.98	0.00	3.0	97.0	0.0	0.22	1.48	0.71	0.79	—	8233	1022	5	0	1	0	0	logfile
✔	8GH2	40031	2024-12-30	2023-03-09	3.66	4.09	3.72	3.9	0.004	0.78	0.0	0.04	14.74	0.01	2.227	10.96	2.14	12.1	86.9	0.9	-1.47	0.77	0.80	1.00	3.9	0.003	0.75	0.0	0.05	16.33	0.01	2.388	9.12	2.21	10.5	89.0	0.5	-0.65	0.53	0.78	0.82	0.89	13941	1846	6	0	0	0	0	logfile
✔	8GFW	29986	2024-12-27	2023-03-08	3.0	3.33	3.12	3.3	0.004	0.57	0.0	0.04	13.59	0.00	2.197	3.13	0.00	2.0	98.0	0.0	0.93	0.66	0.88	4.09	3.3	0.002	0.50	0.0	0.04	15.43	0.00	2.513	1.45	2.30	1.9	98.1	0.0	1.51	0.92	0.66	0.89	3.58	6749	900	8	0	2	5	0	logfile
✔	8GG5	29995	2024-12-27	2023-03-08	3.2	3.42	3.22	3.4	0.004	0.52	0.0	0.04	14.02	0.00	2.292	2.43	0.00	2.8	97.2	0.0	0.36	0.66	0.87	3.91	3.4	0.004	0.53	0.0	0.04	15.53	0.00	2.533	2.20	0.90	2.0	98.0	0.0	0.97	0.28	0.70	0.88	3.39	6799	904	6	0	2	5	0	logfile
✔	8GGE	40004	2024-12-27	2023-03-08	3.5	3.98	3.76	3.9	0.003	0.59	0.0	0.04	12.44	0.00	2.232	6.77	0.00	3.6	96.4	0.0	-0.02	0.66	0.81	2.59	3.9	0.002	0.53	0.0	0.04	14.37	0.00	2.464	2.94	1.96	3.2	96.8	0.0	0.60	0.36	0.66	0.81	1.89	6708	984	6	0	2	0	0	logfile
✔	8GGF	40005	2024-12-27	2023-03-08	3.6	4.03	3.80	4.0	0.005	0.79	0.0	0.05	13.58	0.00	2.147	7.95	0.00	4.4	95.6	0.0	-0.06	0.67	0.82	2.11	4.0	0.002	0.53	0.0	0.04	15.03	0.00	2.494	3.36	1.88	2.3	97.7	0.0	0.57	0.95	0.67	0.81	2.12	6607	956	6	0	2	0	0	logfile
✔	8GH1	40028	2024-12-27	2023-03-08	4.1	4.27	4.19	4.3	0.004	0.57	0.0	0.04	12.64	0.00	2.249	3.87	0.00	3.2	96.8	0.0	1.62	0.52	0.78	—	4.3	0.002	0.57	0.0	0.04	11.98	0.00	2.630	2.21	0.00	2.2	97.8	0.0	1.92	0.95	0.51	0.79	—	1976	281	2	0	1	0	0	logfile
✔	8GG6	29996	2024-12-27	2023-03-08	3.3	3.48	3.26	3.5	0.004	0.55	0.0	0.04	15.25	0.00	2.213	3.55	0.31	1.3	98.7	0.0	0.67	0.70	0.88	3.24	3.5	0.004	0.59	0.0	0.04	15.75	0.00	2.488	2.62	3.27	3.4	96.6	0.0	0.78	0.23	0.69	0.88	3.21	6725	904	6	0	2	4	0	logfile
✔	8GFY	29988	2024-12-27	2023-03-08	3.0	3.27	3.07	3.2	0.003	0.46	0.0	0.04	12.90	0.00	2.222	2.02	0.00	1.7	98.3	0.0	0.86	0.68	0.89	3.61	3.2	0.003	0.52	0.0	0.04	15.52	0.00	2.510	2.25	1.40	2.1	97.9	0.0	1.15	0.27	0.64	0.88	3.43	6670	891	6	0	2	4	0	logfile
✔	8GH0	40027	2024-12-27	2023-03-08	4.0	4.14	4.05	4.2	0.004	0.65	0.0	0.04	13.37	0.00	2.374	4.72	0.00	0.7	99.3	0.0	0.89	0.51	0.79	—	4.2	0.003	0.59	0.0	0.04	15.92	0.00	2.494	4.16	7.89	1.8	98.2	0.0	1.91	0.99	0.52	0.80	—	1954	281	2	0	1	0	0	logfile
✔	8GG3	29993	2024-12-27	2023-03-08	3.1	3.37	3.14	3.3	0.003	0.53	0.0	0.04	13.40	0.00	2.221	3.58	0.00	1.7	98.3	0.0	0.53	0.67	0.87	3.73	3.3	0.003	0.51	0.0	0.04	15.21	0.00	2.391	2.21	1.95	1.8	98.2	0.0	1.24	1.26	0.66	0.87	3.12	6753	894	6	0	2	6	0	logfile
✔	8GGi	40009	2024-12-27	2023-03-08	3.5	3.66	3.43	3.6	0.004	0.69	0.0	0.04	13.75	0.00	2.242	4.12	0.00	1.4	98.6	0.0	1.47	0.58	0.87	2.35	3.6	0.003	0.52	0.0	0.04	15.42	0.00	2.641	2.29	1.33	1.4	98.6	0.0	1.65	0.32	0.57	0.87	2.88	2203	284	2	0	1	2	0	logfile
✔	8GGZ	40026	2024-12-27	2023-03-08	3.9	4.07	4.00	4.1	0.004	0.58	0.0	0.04	12.74	0.00	2.278	5.13	0.00	1.4	98.6	0.0	2.26	0.51	0.78	2.26	4.1	0.003	0.58	0.0	0.04	15.33	0.00	2.615	3.78	5.10	2.9	97.1	0.0	2.26	0.37	0.53	0.81	1.95	1994	281	2	0	1	0	0	logfile
✔	8GGS	40019	2024-12-27	2023-03-08	3.5	3.60	3.45	3.7	0.004	0.56	0.0	0.04	12.38	0.00	2.292	2.18	0.00	0.4	99.6	0.0	2.32	0.52	0.82	2.36	3.6	0.003	0.49	0.0	0.04	14.76	0.00	2.557	2.42	3.40	1.4	98.6	0.0	2.71	0.34	0.53	0.84	1.16	2114	281	2	0	1	0	0	logfile

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