Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGE	40004	2024-12-27	2023-03-08	3.5	3.98	3.76	3.9	0.003	0.59	0.0	0.04	12.44	0.00	2.232	6.77	0.00	3.6	96.4	0.0	-0.02	0.66	0.81	2.59	3.9	0.002	0.53	0.0	0.04	14.37	0.00	2.464	2.94	1.96	3.2	96.8	0.0	0.60	0.36	0.66	0.81	1.89	6708	984	6	0	2	0	0	logfile
✔	8GG5	29995	2024-12-27	2023-03-08	3.2	3.42	3.22	3.4	0.004	0.52	0.0	0.04	14.02	0.00	2.292	2.43	0.00	2.8	97.2	0.0	0.36	0.66	0.87	3.91	3.4	0.004	0.53	0.0	0.04	15.53	0.00	2.533	2.20	0.90	2.0	98.0	0.0	0.97	0.28	0.70	0.88	3.39	6799	904	6	0	2	5	0	logfile
✔	8GG1	29991	2024-12-27	2023-03-08	3.0	3.30	3.07	3.3	0.003	0.54	0.0	0.04	13.13	0.00	2.195	3.43	0.00	1.6	98.4	0.0	0.62	0.66	0.87	3.71	3.3	0.002	0.48	0.0	0.04	15.49	0.00	2.512	2.37	2.11	1.1	98.9	0.0	1.75	0.32	0.62	0.86	3.08	6755	896	6	0	2	5	0	logfile
✔	8GGD	40003	2024-12-30	2023-03-08	3.33	3.78	3.45	3.6	0.004	0.74	0.0	0.05	14.51	0.01	2.228	9.40	2.76	11.0	87.7	1.4	-1.43	0.76	0.83	1.59	3.7	0.003	0.70	0.0	0.04	15.33	0.01	2.500	4.49	1.58	8.8	90.6	0.6	-0.42	0.96	0.77	0.86	1.39	11724	1567	5	0	0	0	0	logfile
✔	8GGH	40008	2024-12-30	2023-03-08	3.29	3.76	3.36	3.6	0.003	0.64	0.0	0.05	13.95	0.01	2.075	7.18	0.24	9.8	89.5	0.6	-1.03	0.76	0.85	1.85	3.7	0.003	0.68	0.0	0.04	15.53	0.01	2.427	5.63	2.12	8.2	91.2	0.5	-0.34	0.40	0.75	0.85	1.64	11798	1577	5	0	0	0	0	logfile
✔	8GGY	40025	2024-12-27	2023-03-08	3.9	4.01	3.93	4.0	0.004	0.63	0.0	0.04	14.74	0.00	2.358	3.48	0.00	1.8	98.2	0.0	2.19	0.50	0.80	2.56	4.1	0.003	0.60	0.0	0.04	16.30	0.00	2.570	3.23	4.15	2.5	97.5	0.0	2.27	0.37	0.52	0.82	1.44	2096	281	2	0	1	0	0	logfile
✔	8GGR	40018	2024-12-27	2023-03-08	3.4	3.49	3.38	3.6	0.004	0.54	0.0	0.04	13.10	0.00	2.387	2.60	0.00	1.8	98.2	0.0	1.94	0.51	0.84	2.68	3.6	0.003	0.51	0.0	0.04	14.62	0.00	2.544	1.89	1.85	1.1	98.9	0.0	2.48	0.24	0.51	0.84	2.68	2143	281	2	0	1	1	0	logfile
✔	8GG3	29993	2024-12-27	2023-03-08	3.1	3.37	3.14	3.3	0.003	0.53	0.0	0.04	13.40	0.00	2.221	3.58	0.00	1.7	98.3	0.0	0.53	0.67	0.87	3.73	3.3	0.003	0.51	0.0	0.04	15.21	0.00	2.391	2.21	1.95	1.8	98.2	0.0	1.24	1.26	0.66	0.87	3.12	6753	894	6	0	2	6	0	logfile
✔	8GGi	40009	2024-12-27	2023-03-08	3.5	3.66	3.43	3.6	0.004	0.69	0.0	0.04	13.75	0.00	2.242	4.12	0.00	1.4	98.6	0.0	1.47	0.58	0.87	2.35	3.6	0.003	0.52	0.0	0.04	15.42	0.00	2.641	2.29	1.33	1.4	98.6	0.0	1.65	0.32	0.57	0.87	2.88	2203	284	2	0	1	2	0	logfile
✔	8GGK	40011	2024-12-27	2023-03-08	3.3	3.43	3.21	3.4	0.004	0.55	0.0	0.04	12.87	0.00	2.259	2.28	0.00	1.4	98.6	0.0	1.77	0.58	0.88	3.16	3.4	0.002	0.47	0.0	0.04	14.04	0.00	2.623	2.05	0.89	0.4	99.6	0.0	2.68	0.25	0.56	0.87	2.83	2218	288	2	0	1	2	0	logfile
✔	8GGM	40013	2024-12-27	2023-03-08	3.2	3.34	3.12	3.3	0.004	0.54	0.0	0.04	13.21	0.00	2.297	2.30	0.00	1.4	98.6	0.0	2.21	0.53	0.88	3.55	3.3	0.003	0.49	0.0	0.04	14.72	0.00	2.644	1.84	1.79	0.7	99.3	0.0	2.73	0.26	0.52	0.88	2.56	2211	287	2	0	1	0	0	logfile
✔	8GGJ	40010	2024-12-27	2023-03-08	3.5	3.54	3.35	3.5	0.004	0.53	0.0	0.04	13.04	0.00	2.245	2.07	0.00	0.4	99.6	0.0	1.95	0.54	0.87	3.64	3.5	0.003	0.49	0.0	0.04	14.40	0.00	2.535	1.38	1.36	0.7	99.3	0.0	2.62	1.24	0.58	0.87	2.46	2201	286	2	0	1	1	0	logfile
✔	8GFX	29987	2024-12-27	2023-03-08	3.0	3.31	3.10	3.3	0.004	0.53	0.0	0.04	13.47	0.00	2.248	3.22	0.00	2.2	97.8	0.0	0.67	0.64	0.88	4.45	3.3	0.002	0.51	0.0	0.04	15.65	0.00	2.510	1.92	3.06	1.9	98.1	0.0	1.35	0.33	0.65	0.89	3.94	6725	896	6	0	2	1	0	logfile
✔	8GG8	29998	2024-12-27	2023-03-08	3.3	3.62	3.40	3.6	0.003	0.50	0.0	0.04	13.45	0.00	2.264	4.44	0.16	1.9	98.1	0.0	0.54	0.68	0.85	2.87	3.6	0.002	0.51	0.0	0.04	15.03	0.00	2.397	2.38	1.81	1.9	98.1	0.0	1.14	0.92	0.67	0.86	2.86	6611	906	6	0	2	0	0	logfile
✔	8CRB	16807	2024-12-28	2023-03-08	4.6	4.12	4.59	4.0	0.013	1.98	2.0	0.10	14.75	0.02	2.540	0.58	1.23	10.1	88.0	1.9	-2.65	0.72	0.61	—	4.0	0.005	0.79	0.0	0.04	13.58	0.01	2.222	16.04	0.00	14.6	84.9	0.5	-2.84	1.48	0.73	0.63	—	8665	582	3	0	0	0	4286	logfile
✔	8CR9	16805	2024-12-28	2023-03-08	4.2	3.61	4.06	4.0	0.013	1.97	3.0	0.10	14.42	0.02	2.568	0.46	2.87	9.6	89.0	1.4	-2.67	0.57	0.61	—	4.0	0.003	0.71	0.0	0.04	13.84	0.01	2.262	7.08	0.00	13.3	86.4	0.4	-2.90	1.03	0.56	0.58	—	8621	571	3	0	0	0	4272	logfile
✔	8GGZ	40026	2024-12-27	2023-03-08	3.9	4.07	4.00	4.1	0.004	0.58	0.0	0.04	12.74	0.00	2.278	5.13	0.00	1.4	98.6	0.0	2.26	0.51	0.78	2.26	4.1	0.003	0.58	0.0	0.04	15.33	0.00	2.615	3.78	5.10	2.9	97.1	0.0	2.26	0.37	0.53	0.81	1.95	1994	281	2	0	1	0	0	logfile
✔	8GH1	40028	2024-12-27	2023-03-08	4.1	4.27	4.19	4.3	0.004	0.57	0.0	0.04	12.64	0.00	2.249	3.87	0.00	3.2	96.8	0.0	1.62	0.52	0.78	—	4.3	0.002	0.57	0.0	0.04	11.98	0.00	2.630	2.21	0.00	2.2	97.8	0.0	1.92	0.95	0.51	0.79	—	1976	281	2	0	1	0	0	logfile
✔	8GGS	40019	2024-12-27	2023-03-08	3.5	3.60	3.45	3.7	0.004	0.56	0.0	0.04	12.38	0.00	2.292	2.18	0.00	0.4	99.6	0.0	2.32	0.52	0.82	2.36	3.6	0.003	0.49	0.0	0.04	14.76	0.00	2.557	2.42	3.40	1.4	98.6	0.0	2.71	0.34	0.53	0.84	1.16	2114	281	2	0	1	0	0	logfile
✔	8GH0	40027	2024-12-27	2023-03-08	4.0	4.14	4.05	4.2	0.004	0.65	0.0	0.04	13.37	0.00	2.374	4.72	0.00	0.7	99.3	0.0	0.89	0.51	0.79	—	4.2	0.003	0.59	0.0	0.04	15.92	0.00	2.494	4.16	7.89	1.8	98.2	0.0	1.91	0.99	0.52	0.80	—	1954	281	2	0	1	0	0	logfile

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