Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGV	40022	2024-12-27	2023-03-08	3.5	3.67	3.59	3.8	0.004	0.59	0.0	0.04	13.63	0.00	2.276	4.79	0.00	1.8	98.2	0.0	2.06	0.49	0.81	1.78	3.8	0.003	0.57	0.0	0.04	16.42	0.00	2.583	3.53	4.86	2.2	97.8	0.0	2.67	0.33	0.50	0.81	1.14	2064	281	2	0	1	0	0	logfile
✔	8GGo	40015	2024-12-27	2023-03-08	3.2	3.33	3.17	3.4	0.005	0.74	0.0	0.05	11.58	0.00	2.307	3.67	0.00	1.5	98.5	0.0	2.30	0.50	0.84	3.84	3.4	0.003	0.48	0.0	0.04	12.81	0.00	2.597	1.71	1.48	1.5	98.5	0.0	2.64	0.89	0.49	0.84	3.13	2095	279	2	0	1	0	0	logfile
✔	8GGN	40014	2024-12-27	2023-03-08	3.3	3.42	3.22	3.4	0.005	0.58	0.0	0.04	13.18	0.00	2.248	2.82	0.00	0.7	99.3	0.0	2.26	0.55	0.86	3.24	3.4	0.003	0.50	0.0	0.04	14.65	0.00	2.599	1.41	2.80	1.4	98.6	0.0	3.08	0.26	0.55	0.86	2.59	2168	285	2	0	1	0	0	logfile
✔	8GG5	29995	2024-12-27	2023-03-08	3.2	3.42	3.22	3.4	0.004	0.52	0.0	0.04	14.02	0.00	2.292	2.43	0.00	2.8	97.2	0.0	0.36	0.66	0.87	3.91	3.4	0.004	0.53	0.0	0.04	15.53	0.00	2.533	2.20	0.90	2.0	98.0	0.0	0.97	0.28	0.70	0.88	3.39	6799	904	6	0	2	5	0	logfile
✔	8GG1	29991	2024-12-27	2023-03-08	3.0	3.30	3.07	3.3	0.003	0.54	0.0	0.04	13.13	0.00	2.195	3.43	0.00	1.6	98.4	0.0	0.62	0.66	0.87	3.71	3.3	0.002	0.48	0.0	0.04	15.49	0.00	2.512	2.37	2.11	1.1	98.9	0.0	1.75	0.32	0.62	0.86	3.08	6755	896	6	0	2	5	0	logfile
✔	8GGE	40004	2024-12-27	2023-03-08	3.5	3.98	3.76	3.9	0.003	0.59	0.0	0.04	12.44	0.00	2.232	6.77	0.00	3.6	96.4	0.0	-0.02	0.66	0.81	2.59	3.9	0.002	0.53	0.0	0.04	14.37	0.00	2.464	2.94	1.96	3.2	96.8	0.0	0.60	0.36	0.66	0.81	1.89	6708	984	6	0	2	0	0	logfile
✔	8GGW	40023	2024-12-27	2023-03-08	3.6	3.67	3.57	3.8	0.004	0.62	0.0	0.04	12.73	0.00	2.241	5.30	0.00	1.8	98.2	0.0	2.12	0.48	0.79	1.29	3.8	0.003	0.55	0.0	0.04	15.08	0.00	2.558	3.03	3.19	1.8	98.2	0.0	2.52	0.32	0.50	0.80	2.03	2079	281	2	0	1	0	0	logfile
✔	8GG7	29997	2024-12-27	2023-03-08	3.3	3.58	3.34	3.6	0.003	0.50	0.0	0.04	13.74	0.00	2.288	4.04	0.16	1.7	98.3	0.0	0.88	0.69	0.86	3.05	3.5	0.003	0.52	0.0	0.04	15.02	0.00	2.503	3.18	1.90	2.3	97.7	0.0	1.12	0.91	0.69	0.87	3.31	6687	903	6	0	2	1	0	logfile
✔	8GFY	29988	2024-12-27	2023-03-08	3.0	3.27	3.07	3.2	0.003	0.46	0.0	0.04	12.90	0.00	2.222	2.02	0.00	1.7	98.3	0.0	0.86	0.68	0.89	3.61	3.2	0.003	0.52	0.0	0.04	15.52	0.00	2.510	2.25	1.40	2.1	97.9	0.0	1.15	0.27	0.64	0.88	3.43	6670	891	6	0	2	4	0	logfile
✔	8GFW	29986	2024-12-27	2023-03-08	3.0	3.33	3.12	3.3	0.004	0.57	0.0	0.04	13.59	0.00	2.197	3.13	0.00	2.0	98.0	0.0	0.93	0.66	0.88	4.09	3.3	0.002	0.50	0.0	0.04	15.43	0.00	2.513	1.45	2.30	1.9	98.1	0.0	1.51	0.92	0.66	0.89	3.58	6749	900	8	0	2	5	0	logfile
✔	8iN8	35592	2024-12-27	2023-03-08	3.0	3.19	3.04	3.2	0.003	0.62	0.0	0.04	21.50	0.01	1.950	10.16	3.63	6.1	93.7	0.1	-0.30	0.71	0.75	1.75	3.2	0.004	0.67	0.0	0.04	21.57	0.01	1.888	8.91	1.82	6.5	93.5	0.0	-0.26	0.96	0.72	0.76	2.12	6663	724	5	47	1	0	0	logfile
✔	8GEL	29974	2024-12-31	2023-03-07	3.9	3.27	3.79	4.0	0.007	0.87	0.0	0.04	14.52	0.00	2.095	21.07	0.00	1.6	98.4	0.0	1.36	0.71	0.79	0.64	4.0	0.003	0.59	0.0	0.03	17.63	0.00	2.625	10.99	2.86	1.2	98.8	0.0	5.62	0.55	0.69	0.77	0.54	15556	1992	4	0	0	0	0	logfile
✔	8GF7	29980	2024-12-27	2023-03-07	4.8	3.61	4.18	4.4	0.003	0.68	0.0	0.06	10.15	0.00	1.681	53.15	0.00	10.2	89.8	0.0	-4.11	0.33	0.53	—	4.4	0.006	1.13	0.0	0.06	13.68	0.00	2.164	22.21	0.00	15.9	83.0	1.1	-3.98	2.03	0.34	0.57	—	3774	540	12	0	6	0	0	logfile
✔	8CQR	16799	2024-12-29	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.003	0.57	0.0	0.04	15.38	0.00	2.258	12.36	2.91	3.8	96.2	0.0	1.13	1.50	0.45	0.67	0.29	9708	618	6	0	0	0	5010	logfile
✔	8CR1	16801	2024-12-28	2023-03-07	3.2	3.42	3.21	3.4	0.003	0.72	0.0	0.05	14.01	0.00	2.243	12.30	0.10	3.9	96.1	0.0	0.14	0.63	0.67	0.98	3.4	0.003	0.75	0.0	0.05	16.66	0.01	2.398	10.85	2.34	3.7	96.3	0.0	0.65	0.61	0.68	0.80	1.48	9205	1158	5	0	1	0	0	logfile
✔	8CR2	16802	2024-12-28	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.004	0.86	0.0	0.05	14.17	0.00	2.358	13.31	0.00	3.5	96.5	0.0	0.33	1.44	0.64	0.68	—	6838	855	5	0	1	0	0	logfile
✔	8GE8	29960	2024-12-27	2023-03-06	3.4	3.74	3.50	3.7	0.003	0.51	0.0	0.04	11.59	0.00	2.208	7.70	0.00	1.8	98.2	0.0	1.20	0.71	0.83	3.43	3.7	0.003	0.51	0.0	0.04	13.54	0.00	2.453	6.35	2.15	1.7	98.3	0.0	1.47	0.35	0.71	0.83	3.09	6557	903	5	0	1	1	0	logfile
✔	8GEF	29968	2024-12-27	2023-03-06	3.8	4.05	3.84	4.0	0.014	0.96	0.0	0.04	13.65	0.00	2.302	7.38	1.42	1.2	98.8	0.0	2.13	0.71	0.80	2.52	4.0	0.002	0.45	0.0	0.04	13.52	0.00	2.608	5.25	2.36	1.2	98.8	0.0	2.37	1.09	0.71	0.79	2.15	6216	941	5	0	1	0	0	logfile
✔	8GEi	29971	2024-12-27	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.004	0.55	0.0	0.04	9.18	0.00	2.603	5.01	0.00	3.8	96.2	0.0	0.91	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile
✔	8GEE	29967	2024-12-27	2023-03-06	3.7	3.96	3.74	3.9	0.016	0.82	0.0	0.04	12.17	0.01	2.199	7.10	0.00	1.4	98.6	0.0	1.70	0.70	0.80	2.54	3.9	0.003	0.48	0.0	0.04	14.01	0.00	2.564	5.89	2.16	1.5	98.5	0.0	1.84	0.31	0.70	0.80	1.53	6304	933	5	0	1	1	0	logfile

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