Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8iKG	35511	2024-12-28	2023-02-28	3.4	3.67	3.39	3.7	0.005	0.71	1.0	0.04	13.86	0.00	2.225	11.28	0.34	4.7	95.3	0.0	-0.19	0.63	0.76	1.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8456	1098	6	0	1	0	0	logfile
✔	8GBR	29920	2024-12-27	2023-02-28	3.4	3.85	1.72	3.9	0.004	0.59	0.0	0.05	13.84	0.01	2.120	3.17	0.00	1.1	98.9	0.0	-2.35	0.56	0.83	4.22	4.0	0.005	0.78	0.0	0.05	14.29	0.00	2.537	6.34	4.30	7.9	92.1	0.0	-2.79	2.32	0.49	0.78	4.18	3630	465	5	0	0	0	0	logfile
✔	8iKL	35516	2024-12-27	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.54	0.0	0.04	15.24	0.00	2.532	5.40	1.19	2.5	97.5	0.0	1.62	0.34	0.83	0.83	3.53	6942	875	4	0	0	0	0	logfile
✔	8iKB	35508	2024-12-27	2023-02-28	3.71	3.37	3.27	3.6	0.009	4.38	45.0	0.34	11.37	0.00	1.899	43.20	0.00	2.9	97.1	0.0	-5.58	0.28	0.73	2.50	3.6	0.049	3.13	0.0	0.15	19.38	0.01	2.042	87.04	21.43	52.1	44.3	3.6	-7.77	1.61	0.33	0.85	3.58	1764	252	28	0	0	0	0	logfile
✔	8CoG	16776	2024-12-27	2023-02-28	3.499	3.54	3.41	3.5	0.017	2.04	1.0	0.09	17.63	0.01	2.346	10.60	2.22	5.7	94.3	0.0	-2.96	0.54	0.85	2.28	3.5	0.003	0.71	0.0	0.04	17.36	0.00	2.192	5.47	3.16	3.3	96.7	0.0	0.15	1.33	0.56	0.83	1.91	2949	374	2	0	2	0	0	logfile
✔	8iK7	35505	2024-12-27	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.051	2.58	2.0	0.15	19.79	0.01	2.121	73.21	26.67	55.4	42.3	2.4	-7.57	1.61	0.34	0.87	3.90	1488	216	24	0	0	0	0	logfile
✔	8iKH	35512	2024-12-28	2023-02-28	3.3	3.46	3.23	3.5	0.004	0.61	1.0	0.04	14.35	0.00	2.194	8.11	0.23	4.4	95.6	0.0	0.29	0.63	0.74	1.70	3.4	0.003	0.55	0.0	0.04	15.92	0.00	2.476	6.25	1.80	4.9	95.1	0.0	0.27	0.42	0.63	0.79	1.89	8403	1091	6	0	1	0	0	logfile
✔	8iKJ	35514	2024-12-27	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.004	0.77	0.0	0.04	13.71	0.00	2.540	8.88	0.66	2.5	97.5	0.0	1.54	1.07	0.80	0.79	2.18	4200	532	2	0	3	0	0	logfile
✔	8iJV	35500	2024-12-29	2023-02-28	2.1	2.26	2.14	2.3	0.008	1.10	0.0	0.07	20.11	0.01	1.973	7.26	2.73	2.1	97.9	0.0	1.17	0.62	0.83	5.35	2.3	0.003	0.70	0.0	0.06	19.45	0.00	1.901	4.17	2.26	1.8	98.2	0.0	1.47	0.78	0.64	0.85	5.22	10532	1251	6	0	12	369	0	logfile
✔	8iJX	35502	2024-12-29	2023-02-28	2.08	2.24	2.11	2.3	0.007	0.93	0.0	0.05	15.62	0.01	2.024	5.04	1.50	1.7	98.3	0.0	1.40	0.64	0.84	6.06	2.3	0.003	0.54	0.0	0.04	16.75	0.00	1.989	4.11	1.69	1.6	98.4	0.0	1.65	1.09	0.69	0.87	5.53	10545	1251	6	0	12	373	0	logfile
✔	8iJD	35485	2024-12-28	2023-02-27	3.25	3.91	1.15	3.7	0.008	1.20	10.0	0.07	16.92	0.01	1.812	17.05	2.30	5.8	94.2	0.0	-0.43	0.69	0.82	1.82	3.7	0.005	0.82	0.0	0.05	16.77	0.00	2.514	12.65	4.60	5.0	94.9	0.1	0.13	0.93	0.71	0.86	1.74	8724	1136	6	0	1	0	0	logfile
✔	8iJM	35489	2024-12-29	2023-02-27	3.13	3.40	3.15	3.4	0.005	0.78	0.0	0.04	15.62	0.00	2.222	9.28	0.93	4.4	95.6	0.1	-0.95	0.65	0.75	2.20	3.4	0.003	0.62	0.0	0.04	15.98	0.00	2.310	7.55	2.42	4.4	95.6	0.0	-0.12	0.33	0.69	0.79	1.70	9982	1248	4	0	7	0	0	logfile
✔	8iJQ	35492	2024-12-30	2023-02-27	3.45	3.70	3.43	3.7	0.004	0.62	0.0	0.04	15.19	0.00	2.191	5.41	0.00	9.7	90.2	0.1	-1.63	0.63	0.80	2.05	3.7	0.005	0.88	1.0	0.04	16.20	0.00	2.038	6.46	2.49	10.8	89.2	0.0	-0.05	0.47	0.63	0.82	1.74	13380	1584	12	0	6	0	0	logfile
✔	8iJL	35488	2024-12-29	2023-02-27	2.62	2.89	2.65	2.9	0.006	1.26	0.0	0.05	22.22	0.01	1.836	8.95	3.82	2.1	97.9	0.0	0.58	0.67	0.87	4.25	2.9	0.003	0.79	0.0	0.04	17.60	0.00	1.654	5.92	2.79	2.5	97.5	0.0	0.93	0.25	0.70	0.88	3.92	10360	1248	5	0	17	8	0	logfile
✔	8GBJ	29917	2024-12-28	2023-02-26	3.11	3.29	3.11	3.3	0.006	0.82	0.0	0.05	16.14	0.00	2.073	14.62	0.37	2.4	97.6	0.0	0.15	0.67	0.82	3.86	3.3	0.004	0.60	0.0	0.04	16.15	0.00	2.546	11.88	1.36	2.3	97.7	0.0	0.14	0.94	0.66	0.83	2.84	7467	930	8	6	3	0	0	logfile
✔	8iJA	35483	2024-12-28	2023-02-26	2.69	3.07	1.13	2.9	0.005	1.10	10.0	0.08	18.23	0.00	1.793	11.25	5.37	4.8	95.1	0.1	0.12	0.65	0.86	3.13	2.9	0.005	0.68	0.0	0.04	17.73	0.00	2.480	8.45	3.05	5.7	94.3	0.0	0.36	0.29	0.68	0.87	3.34	8845	1136	6	0	1	0	0	logfile
✔	8iJ5	35465	2024-12-27	2023-02-26	3.0	2.31	2.97	1.9	0.003	0.61	0.0	0.04	19.84	0.00	2.234	10.86	11.22	9.1	90.8	0.1	-2.39	0.76	0.78	2.60	1.9	0.006	0.75	0.0	0.05	19.12	0.01	2.460	10.86	7.97	10.9	89.1	0.0	-2.26	0.29	0.76	0.79	3.16	6815	878	2	0	0	0	0	logfile
✔	8iJ3	35463	2024-12-28	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.004	0.65	0.0	0.04	17.68	0.00	2.522	4.92	4.17	4.8	95.1	0.1	0.22	0.31	0.73	0.87	2.48	8772	1134	5	0	0	0	0	logfile
✔	8GB3	29912	2024-12-27	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.004	0.70	0.0	0.04	14.85	0.00	2.495	16.11	4.66	7.5	92.5	0.0	-0.56	0.47	0.67	0.61	0.90	5537	735	3	0	0	0	0	logfile
✔	8GAU	29908	2024-12-27	2023-02-23	3.6	2.50	3.56	2.1	0.006	1.04	1.0	0.06	10.37	0.02	2.285	3.47	0.96	10.1	89.5	0.4	-4.38	0.67	0.77	3.32	2.2	0.005	1.09	1.0	0.06	15.62	0.00	2.323	6.71	4.68	8.1	91.9	0.0	-2.38	1.27	0.67	0.77	2.30	6604	851	6	0	1	0	0	logfile

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