Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8iHM	35449	2024-12-30	2023-02-23	3.58	4.09	3.79	3.9	0.007	0.75	0.0	0.04	29.27	0.00	2.297	10.88	0.00	3.9	96.1	0.0	-3.94	0.84	0.83	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13153	885	12	317	0	0	0	logfile
✔	8GAQ	29904	2024-12-27	2023-02-23	3.73	4.01	3.78	4.0	0.005	0.70	0.0	0.04	16.74	0.00	2.278	5.61	0.15	1.7	98.3	0.0	-3.14	0.69	0.78	2.28	4.0	0.004	0.71	0.0	0.04	17.77	0.00	2.292	7.76	2.90	1.8	98.2	0.0	-0.17	1.16	0.69	0.78	1.21	5825	735	5	0	0	0	0	logfile
✔	8CNi	16758	2024-12-29	2023-02-23	3.35	3.60	3.33	3.6	0.005	0.48	0.0	0.04	9.35	0.00	2.126	6.38	0.34	3.6	96.4	0.0	-1.46	0.58	0.84	3.88	3.6	0.002	0.53	0.0	0.04	12.82	0.00	2.200	4.72	1.01	2.5	97.5	0.0	0.26	0.76	0.57	0.86	2.76	11397	742	3	0	0	0	5679	logfile
✔	8GAU	29908	2024-12-27	2023-02-23	3.6	2.50	3.56	2.1	0.006	1.04	1.0	0.06	10.37	0.02	2.285	3.47	0.96	10.1	89.5	0.4	-4.38	0.67	0.77	3.32	2.2	0.005	1.09	1.0	0.06	15.62	0.00	2.323	6.71	4.68	8.1	91.9	0.0	-2.38	1.27	0.67	0.77	2.30	6604	851	6	0	1	0	0	logfile
✔	8iHU	35459	2024-12-27	2023-02-23	2.97	2.96	2.80	3.2	0.005	0.72	0.0	0.05	12.54	0.00	2.039	9.90	0.00	20.0	80.0	0.0	-5.66	0.42	0.86	5.85	3.1	0.003	0.71	0.0	0.05	15.93	0.00	2.639	5.61	0.61	17.1	82.9	0.0	-4.13	1.05	0.43	0.90	5.15	1527	216	3	0	0	0	0	logfile
✔	8CNK	16759	2024-12-28	2023-02-23	2.97	2.39	2.90	2.9	0.005	0.66	0.0	0.04	10.65	0.00	2.290	3.11	0.00	0.5	99.5	0.0	1.09	0.77	0.75	1.20	2.7	0.003	0.66	0.0	0.04	15.01	0.00	2.586	8.30	1.88	0.8	99.2	0.0	2.70	1.13	0.77	0.78	1.24	8850	1120	10	0	5	0	0	logfile
✔	8iHV	35460	2024-12-27	2023-02-23	3.11	3.08	2.87	3.3	0.005	0.73	0.0	0.05	13.40	0.00	2.395	12.57	0.00	23.9	76.1	0.0	-6.37	0.39	0.84	6.17	3.3	0.004	0.72	0.0	0.05	15.28	0.00	2.446	3.14	3.21	17.9	82.1	0.0	-4.92	0.91	0.40	0.86	6.09	1446	207	3	0	0	0	0	logfile
✔	8iHH	35444	2024-12-28	2023-02-22	3.06	3.40	3.17	3.4	0.003	0.53	0.0	0.04	16.53	0.00	2.165	6.84	0.22	3.7	96.3	0.0	-0.71	0.67	0.82	3.46	3.4	0.003	0.56	0.0	0.04	17.03	0.00	2.553	5.25	3.22	3.0	97.0	0.0	0.20	1.07	0.67	0.82	3.27	8670	1131	6	0	2	0	0	logfile
✔	8iHJ	35446	2024-12-28	2023-02-22	3.07	3.50	3.25	3.5	0.002	0.47	0.0	0.04	16.68	0.00	2.152	5.68	0.11	3.3	96.7	0.0	-0.90	0.67	0.86	2.64	3.5	0.002	0.52	0.0	0.04	16.94	0.00	2.534	4.77	3.56	3.3	96.7	0.0	0.06	0.36	0.61	0.83	2.14	8509	1122	6	0	1	0	0	logfile
✔	8iHK	35447	2024-12-27	2023-02-22	3.21	3.56	3.40	3.6	0.003	0.57	0.0	0.04	16.21	0.00	2.246	4.47	0.00	2.8	97.2	0.0	-0.99	0.51	0.79	1.56	3.6	0.003	0.58	0.0	0.04	17.40	0.00	2.624	3.80	5.51	3.6	96.4	0.0	0.88	0.37	0.48	0.78	1.01	2253	283	2	0	1	0	0	logfile
✔	8iHi	35445	2024-12-28	2023-02-22	3.11	3.43	3.22	3.5	0.003	0.53	0.0	0.04	16.78	0.01	2.221	5.72	0.22	2.8	97.2	0.0	-0.60	0.68	0.83	2.69	3.5	0.004	0.63	0.0	0.04	16.85	0.00	2.546	5.37	2.90	3.5	96.5	0.0	0.36	0.33	0.65	0.82	2.33	8665	1131	6	0	2	0	0	logfile
✔	8iHF	35443	2024-12-28	2023-02-22	2.97	3.26	3.05	3.3	0.003	0.53	0.0	0.04	17.37	0.00	2.218	6.05	0.11	3.8	96.2	0.0	-0.41	0.69	0.85	2.78	3.3	0.003	0.58	0.0	0.04	17.75	0.00	2.606	5.88	3.32	2.8	97.2	0.0	0.34	0.91	0.65	0.85	2.55	8691	1131	6	0	2	0	0	logfile
✔	8iHB	35442	2024-12-28	2023-02-22	2.85	3.06	2.88	3.1	0.004	0.54	0.0	0.04	17.04	0.00	2.202	6.32	0.44	3.5	96.5	0.0	-0.70	0.64	0.86	3.13	3.1	0.003	0.57	0.0	0.04	17.41	0.00	2.600	5.74	3.74	2.6	97.4	0.0	0.60	0.88	0.65	0.86	2.79	8708	1131	6	0	2	0	0	logfile
✔	8GA3	29885	2024-12-27	2023-02-22	3.1	3.32	3.21	3.3	0.005	0.89	0.0	0.05	14.76	0.01	2.294	4.25	0.00	7.0	93.0	0.0	-6.60	0.65	0.81	2.52	3.3	0.003	0.68	0.0	0.04	15.73	0.00	2.532	6.18	0.91	6.6	93.4	0.0	-0.73	0.40	0.60	0.81	1.58	6590	886	4	0	4	0	0	logfile
✔	8GAG	29898	2024-12-28	2023-02-22	3.3	3.55	3.31	3.5	0.005	0.81	0.0	0.05	15.82	0.00	2.132	14.56	0.00	3.5	96.5	0.0	-1.79	0.63	0.68	1.54	3.5	0.003	0.63	0.0	0.04	16.97	0.00	2.426	7.49	2.74	2.8	97.2	0.0	-0.25	0.94	0.60	0.72	0.91	8469	1110	6	0	1	0	0	logfile
✔	8GAH	29899	2024-12-27	2023-02-22	2.9	3.08	2.95	3.1	0.005	0.88	0.0	0.05	13.56	0.01	2.280	4.27	0.00	5.9	94.1	0.0	-6.49	0.65	0.83	3.19	3.1	0.003	0.68	0.0	0.04	15.58	0.00	2.486	8.39	2.02	4.2	95.8	0.0	0.03	0.46	0.63	0.84	2.88	6424	864	4	0	4	0	0	logfile
✔	8GA5	29890	2024-12-27	2023-02-22	2.6	2.87	2.69	2.9	0.005	0.80	0.0	0.05	13.67	0.01	2.279	3.55	0.00	1.9	98.1	0.0	-5.58	0.68	0.87	4.21	2.9	0.003	0.60	0.0	0.04	15.37	0.00	2.607	7.82	1.33	1.0	99.0	0.0	2.38	0.93	0.59	0.85	3.61	6789	900	6	0	6	29	0	logfile
✔	8GA1	29884	2024-12-27	2023-02-22	2.6	2.70	2.65	2.7	0.005	0.85	0.0	0.05	14.04	0.01	2.284	3.92	0.00	4.8	95.2	0.0	-5.16	0.71	0.84	3.71	2.7	0.003	0.64	0.0	0.04	15.78	0.01	2.517	9.50	1.33	3.2	96.8	0.0	2.02	0.94	0.67	0.85	2.88	6781	900	6	0	4	35	0	logfile
✔	8GA0	29883	2024-12-27	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.003	0.66	0.0	0.04	15.84	0.00	2.529	7.19	2.72	3.3	96.7	0.0	-2.00	0.48	0.62	0.76	1.21	6598	882	2	0	0	0	0	logfile
✔	8G92	29860	2024-12-27	2023-02-21	3.6	3.86	3.44	3.8	0.005	0.68	0.0	0.04	13.63	0.00	2.219	8.32	0.00	2.4	97.6	0.0	-1.13	0.56	0.81	3.18	3.8	0.004	0.66	0.0	0.04	15.20	0.00	2.580	7.24	3.27	1.5	98.5	0.0	2.29	0.48	0.56	0.81	2.64	3211	415	2	0	1	0	0	logfile

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