Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G92	29860	2024-12-27	2023-02-21	3.6	3.86	3.44	3.8	0.005	0.68	0.0	0.04	13.63	0.00	2.219	8.32	0.00	2.4	97.6	0.0	-1.13	0.56	0.81	3.18	3.8	0.004	0.66	0.0	0.04	15.20	0.00	2.580	7.24	3.27	1.5	98.5	0.0	2.29	0.48	0.56	0.81	2.64	3211	415	2	0	1	0	0	logfile
✔	8CMT	16745	2024-12-31	2023-02-21	3.04	3.45	3.15	3.3	0.012	1.74	4.0	0.09	13.75	0.03	1.953	1.39	1.81	3.5	96.3	0.1	-0.21	0.73	0.79	4.31	3.3	0.003	0.58	0.0	0.04	14.90	0.00	2.477	4.28	1.04	2.8	97.1	0.0	0.33	1.69	0.75	0.87	3.53	16518	2058	4	0	0	0	0	logfile
✔	8G94	29861	2024-12-28	2023-02-21	3.15	3.43	3.12	3.3	0.006	0.72	0.0	0.05	13.02	0.00	2.206	6.51	0.00	4.1	95.9	0.0	-2.32	0.70	0.87	3.37	3.3	0.003	0.61	0.0	0.04	15.16	0.00	2.560	7.38	1.80	3.3	96.7	0.0	0.66	0.96	0.71	0.89	2.73	9222	1187	7	0	0	0	0	logfile
✔	8G8Y	29858	2024-12-30	2023-02-20	3.8	3.46	4.04	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.142	5.66	0.72	1.2	98.8	0.0	2.57	0.52	0.86	2.49	3.4	0.003	0.59	0.0	0.04	16.84	0.00	2.307	5.29	3.09	1.0	99.0	0.0	3.06	0.41	0.53	0.86	2.50	13717	1715	12	0	0	0	0	logfile
✔	8CML	16730	2024-12-30	2023-02-20	3.6	3.88	3.60	3.9	0.003	0.66	0.0	0.05	16.47	0.00	2.115	9.39	0.60	5.3	94.5	0.2	-0.48	0.72	0.73	1.78	3.9	0.005	0.69	0.0	0.05	16.75	0.00	2.514	7.98	4.30	6.1	93.8	0.1	-0.33	0.45	0.72	0.75	2.07	13594	1728	5	0	2	0	0	logfile
✔	8G8W	29857	2024-12-28	2023-02-20	3.8	4.07	3.71	4.0	0.004	0.69	0.0	0.05	17.42	0.00	2.234	5.38	0.18	1.8	98.2	0.0	1.75	0.72	0.82	1.89	4.0	0.003	0.56	0.0	0.04	16.25	0.00	2.399	4.32	2.58	2.7	97.3	0.0	1.77	0.90	0.72	0.83	2.07	6471	902	5	0	6	0	0	logfile
✔	8iFY	35426	2024-12-26	2023-02-20	2.55	3.50	2.66	2.7	0.005	0.77	1.0	0.05	16.51	0.01	1.700	8.57	1.54	3.7	96.1	0.2	-0.55	0.73	0.52	2.53	2.7	0.007	0.67	0.0	0.05	15.92	0.00	2.423	5.75	1.92	3.9	96.1	0.0	-0.26	0.40	0.82	0.82	2.22	34248	4218	24	0	55	0	0	logfile
✔	8iFZ	35427	2024-12-29	2023-02-20	2.85	3.79	3.41	3.2	0.004	0.60	0.0	0.04	17.66	0.01	2.185	5.99	2.31	3.8	96.1	0.1	-1.72	0.73	0.76	1.98	3.3	0.003	0.69	0.0	0.04	17.31	0.00	2.038	5.43	2.89	3.2	96.8	0.0	-0.61	2.92	0.75	0.87	2.15	6506	789	3	0	6	0	0	logfile
✔	8iGG	35432	2024-12-31	2023-02-20	4.09	4.18	4.06	4.1	0.003	0.61	0.0	0.04	15.14	0.00	2.146	9.75	0.00	7.4	92.6	0.0	-0.07	0.74	0.82	—	4.1	0.003	0.64	0.0	0.04	15.39	0.00	2.492	7.92	0.00	6.9	93.0	0.1	-0.05	0.35	0.75	0.82	—	15998	2054	4	0	0	0	0	logfile
✔	8iFU	35423	2024-12-27	2023-02-19	2.37	2.61	2.40	2.6	0.017	1.97	12.0	0.14	27.73	0.02	1.417	17.91	16.44	2.7	96.9	0.4	-2.87	0.67	0.84	3.46	2.6	0.003	0.60	0.0	0.04	19.39	0.00	2.197	6.09	3.20	0.9	99.1	0.0	2.84	0.89	0.62	0.86	3.75	6732	777	9	0	57	33	0	logfile
✔	8iFK	35419	2024-12-28	2023-02-18	2.54	2.85	2.66	2.9	0.004	0.73	0.0	0.05	20.29	0.01	1.744	18.46	4.35	3.4	96.6	0.0	-0.23	0.69	0.81	3.19	2.9	0.004	0.60	0.0	0.04	20.18	0.00	1.981	12.28	2.04	3.5	96.5	0.0	-0.12	0.24	0.65	0.79	3.28	7632	823	5	41	1	0	0	logfile
✔	8iFF	35415	2024-12-30	2023-02-17	3.1	3.34	3.19	3.3	0.004	0.63	0.0	0.04	18.24	0.01	2.153	9.51	0.27	5.2	94.8	0.0	-0.43	0.66	0.81	1.60	3.3	0.002	0.57	0.0	0.04	18.28	0.00	2.451	6.02	4.20	4.4	95.6	0.0	-0.02	0.91	0.64	0.80	1.51	13698	1736	4	0	2	0	0	logfile
✔	8G8B	29845	2024-12-30	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	28.76	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.006	0.74	0.0	0.04	28.79	0.01	2.312	23.02	0.00	2.5	97.5	0.0	0.90	1.94	0.90	0.81	—	14067	902	11	336	0	0	0	logfile
✔	8G88	29843	2024-12-30	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.004	0.66	0.0	0.04	28.88	0.00	2.084	17.73	0.00	2.3	97.7	0.0	1.40	1.98	0.91	0.80	—	13995	891	11	336	0	0	0	logfile
✔	8G8G	29850	2024-12-30	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.41	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.006	0.71	0.0	0.04	28.66	0.00	2.354	11.58	0.76	3.3	96.7	0.0	1.92	1.55	0.91	0.88	1.79	14558	931	11	348	0	0	0	logfile
✔	8G8E	29846	2024-12-27	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.39	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.63	0.0	0.03	27.93	0.00	2.380	14.08	0.00	2.9	97.1	0.0	-0.04	1.84	0.91	0.82	—	2464	140	3	64	0	0	0	logfile
✔	8G86	29837	2024-12-29	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.26	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.5	0.004	0.62	0.0	0.04	28.89	0.00	2.104	7.04	3.64	1.2	98.8	0.0	2.56	0.91	0.69	0.85	4.76	11972	759	10	290	0	0	0	logfile
✔	8iF8	35410	2024-12-28	2023-02-17	3.1	3.58	3.22	3.5	0.007	0.81	3.0	0.05	13.08	0.01	2.234	6.73	0.00	7.7	92.3	0.0	0.00	0.70	0.87	3.01	3.5	0.004	0.60	0.0	0.04	14.45	0.00	2.463	4.45	0.96	5.8	94.2	0.0	1.60	0.31	0.69	0.88	2.22	9307	1218	4	0	2	0	0	logfile
✔	8G7V	29825	2024-12-30	2023-02-17	3.9	4.01	3.87	3.9	0.007	0.85	0.0	0.05	16.75	0.01	2.246	5.87	0.42	6.0	94.0	0.0	-4.07	0.77	0.81	1.77	3.9	0.005	0.71	0.0	0.04	17.49	0.00	2.408	10.21	2.91	9.2	90.8	0.0	-1.24	0.56	0.77	0.81	1.29	14007	1621	8	45	3	0	0	logfile
✔	8CKY	16706	2024-12-29	2023-02-16	2.6	3.00	2.57	2.9	0.004	0.82	0.0	0.05	12.58	0.01	1.934	7.36	0.54	0.5	99.5	0.0	0.21	0.62	0.77	5.97	2.9	0.003	0.56	0.0	0.04	17.77	0.00	2.587	7.46	3.99	0.6	99.4	0.0	1.91	0.58	0.62	0.79	4.85	10338	1344	12	0	0	0	0	logfile

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