Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iC0	35351	2024-12-29	2023-02-10	3.41	3.75	3.43	3.8	0.003	0.55	0.0	0.04	13.84	0.00	2.163	8.36	0.10	4.3	95.7	0.0	-1.57	0.64	0.75	2.29	3.9	0.003	0.61	0.0	0.04	16.09	0.00	2.456	7.63	2.34	4.1	95.9	0.0	-0.85	1.15	0.62	0.74	1.88	9553	1228	6	0	0	0	0	logfile
✔	8Cio	16683	2024-12-27	2023-02-10	3.5	3.28	3.48	3.8	0.002	0.55	0.0	0.05	11.52	0.00	2.032	8.03	0.00	8.9	91.1	0.0	-1.60	0.73	0.83	2.66	3.8	0.003	0.68	0.0	0.05	13.83	0.00	2.521	6.69	2.86	9.0	90.3	0.6	-1.84	0.50	0.72	0.84	2.55	5655	795	5	0	0	0	0	logfile
✔	8iBW	35347	2024-12-29	2023-02-10	3.6	4.08	3.81	3.9	0.004	0.73	0.0	0.04	23.49	0.01	2.018	12.05	0.39	6.1	93.5	0.3	-0.62	0.82	0.79	1.45	3.9	0.003	0.63	0.0	0.04	23.24	0.00	2.391	11.24	3.29	4.4	95.3	0.3	0.34	1.63	0.82	0.80	1.09	9848	922	5	125	2	0	0	logfile
✔	8iBY	35349	2024-12-29	2023-02-10	3.47	3.81	3.66	3.7	0.003	0.62	0.0	0.03	23.52	0.01	2.187	11.40	0.00	4.6	95.3	0.1	0.06	0.77	0.76	1.66	3.7	0.002	0.61	0.0	0.04	23.47	0.00	2.199	9.19	2.84	4.1	95.8	0.1	0.30	1.60	0.77	0.78	1.34	10503	793	3	198	1	0	0	logfile
✔	8iBN	35344	2024-12-28	2023-02-10	3.03	3.55	3.13	3.5	0.007	0.99	0.0	0.06	14.42	0.00	2.296	8.00	0.00	4.0	96.0	0.0	-1.98	0.60	0.53	0.83	3.5	0.003	0.59	0.0	0.05	15.74	0.00	2.529	12.25	1.67	4.1	95.9	0.0	-0.50	1.14	0.62	0.56	1.41	8940	1224	8	0	8	0	0	logfile
✔	8G4C	29716	2024-12-31	2023-02-09	3.1	3.36	3.19	3.4	0.004	0.59	0.0	0.04	16.59	0.00	2.236	6.06	0.25	4.4	95.6	0.0	0.73	0.62	0.77	2.20	3.4	0.002	0.46	0.0	0.04	17.05	0.00	2.550	4.19	1.34	3.8	96.1	0.1	1.32	0.26	0.65	0.84	2.04	14503	1803	8	0	3	0	0	logfile
✔	8Ci8	16671	2024-12-27	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.004	0.63	0.0	0.04	16.74	0.00	2.608	9.06	6.93	1.1	98.9	0.0	-3.21	1.20	0.66	0.86	5.09	3430	485	25	0	0	0	0	logfile
✘	8iB2	35329	2024-12-31	2023-02-09	3.8	3.87	3.55	3.8	0.003	0.69	0.0	0.05	13.90	0.01	2.232	3.61	0.00	2.2	97.8	0.0	-0.01	0.59	0.86	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15229	1931	11	0	5	0	0	logfile
✔	8G4E	29718	2024-12-27	2023-02-09	2.98	3.13	2.86	3.1	0.003	0.53	0.0	0.04	15.97	0.00	2.266	7.32	2.16	2.3	97.7	0.0	0.43	0.59	0.82	2.62	3.1	0.003	0.61	0.0	0.04	17.73	0.00	2.373	5.53	5.56	3.1	96.9	0.0	1.17	0.39	0.58	0.82	2.24	3097	396	3	0	1	0	0	logfile
✔	8G4D	29717	2024-12-31	2023-02-09	3.6	3.83	3.76	3.7	0.003	0.68	0.0	0.04	15.33	0.00	2.213	10.57	0.64	6.3	93.7	0.0	0.05	0.69	0.73	2.01	3.7	0.003	0.66	0.0	0.04	17.09	0.00	2.472	8.75	1.47	4.9	95.0	0.1	0.61	0.50	0.68	0.73	1.75	14402	1795	7	0	2	0	0	logfile
✔	8iAZ	35323	2024-12-28	2023-02-09	3.0	2.86	2.95	3.0	0.006	0.80	0.0	0.05	26.19	0.00	2.239	8.08	4.37	7.1	92.7	0.3	0.24	0.67	0.83	2.76	3.0	0.005	0.76	0.0	0.04	25.79	0.00	2.417	4.57	4.66	7.9	91.9	0.3	-0.12	0.95	0.68	0.86	2.74	7396	384	5	203	1	0	0	logfile
✔	8Cii	16676	2024-12-28	2023-02-09	2.7	3.78	2.78	3.4	0.005	0.57	0.0	0.04	10.81	0.00	2.253	5.18	0.40	2.1	97.9	0.0	0.69	0.87	0.87	3.79	3.4	0.004	0.77	0.0	0.05	13.70	0.00	2.275	8.28	1.68	3.2	96.8	0.0	0.58	1.07	0.86	0.84	3.66	9024	1168	7	0	4	0	0	logfile
✔	8iA8	35298	2024-12-28	2023-02-08	2.86	3.35	2.89	3.2	0.005	0.63	0.0	0.04	12.72	0.00	2.148	5.76	0.42	4.4	95.6	0.0	-1.21	0.72	0.87	4.30	3.2	0.003	0.59	0.0	0.04	15.13	0.00	2.578	4.33	2.20	3.4	96.6	0.0	0.51	0.35	0.66	0.86	3.30	8810	1136	6	0	0	0	0	logfile
✔	8G46	29714	2024-12-28	2023-02-08	2.2	2.34	2.28	2.4	0.008	0.88	0.0	0.06	15.57	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.002	0.54	0.0	0.04	16.06	0.00	2.559	5.07	1.27	2.9	97.1	0.0	0.41	0.26	0.62	0.82	3.73	8603	1064	7	0	2	110	0	logfile
✔	8G3R	29709	2024-12-31	2023-02-08	2.3	3.00	2.32	2.8	0.014	1.67	4.0	0.09	14.04	0.01	2.187	0.45	0.06	3.4	96.4	0.2	-0.80	0.84	0.92	6.44	2.8	0.003	0.63	0.0	0.05	13.67	0.00	2.266	3.65	0.78	2.7	97.1	0.2	-0.04	0.44	0.75	0.88	5.43	14899	1790	38	0	86	0	0	logfile
✔	8Ci5	16670	2024-12-29	2023-02-08	3.2	2.86	3.15	3.1	0.014	1.19	0.0	0.07	15.44	0.01	2.190	3.74	0.00	8.3	91.1	0.6	-3.88	0.79	0.85	4.05	3.1	0.003	0.60	0.0	0.04	16.10	0.00	2.446	4.37	0.54	3.8	96.1	0.1	0.52	0.93	0.78	0.86	3.25	10365	1258	2	11	0	0	0	logfile
✔	8Ci1	16665	2024-12-30	2023-02-08	2.8	3.61	2.72	3.2	0.002	0.47	0.0	0.04	9.05	0.00	2.122	16.30	0.70	3.5	96.5	0.0	0.01	0.91	0.92	5.34	3.2	0.004	0.70	0.0	0.05	13.68	0.01	2.450	5.12	0.84	4.5	95.5	0.0	-0.25	0.99	0.87	0.91	4.95	13595	1660	20	0	25	0	0	logfile
✔	8iA7	35297	2024-12-28	2023-02-08	3.1	3.36	3.21	3.4	0.004	0.73	0.0	0.05	12.55	0.00	2.202	7.95	0.00	5.0	94.8	0.2	-2.23	0.58	0.78	2.60	3.4	0.003	0.59	0.0	0.04	15.00	0.00	2.543	4.77	2.79	5.2	94.8	0.0	0.24	0.39	0.59	0.80	2.44	8586	1123	7	0	1	0	0	logfile
✔	8G3L	29701	2024-12-31	2023-02-08	3.5	3.60	3.55	3.6	0.006	0.81	0.0	0.05	16.63	0.01	2.191	7.84	0.00	5.5	94.5	0.0	-0.13	0.66	0.73	2.04	3.6	0.003	0.62	0.0	0.04	17.45	0.00	2.429	5.96	1.41	4.4	95.5	0.1	0.41	0.38	0.66	0.73	1.52	14442	1791	7	0	4	0	0	logfile
✔	8G3K	29700	2024-12-27	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.004	0.55	0.0	0.04	16.87	0.00	2.619	3.72	1.65	0.7	99.3	0.0	4.33	1.14	0.47	0.84	5.18	2244	285	2	0	0	0	0	logfile

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