Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Ci5	16670	2024-12-29	2023-02-08	3.2	2.86	3.15	3.1	0.014	1.19	0.0	0.07	15.44	0.01	2.190	3.74	0.00	8.3	91.1	0.6	-3.88	0.79	0.85	4.05	3.1	0.003	0.60	0.0	0.04	16.10	0.00	2.446	4.37	0.54	3.8	96.1	0.1	0.52	0.93	0.78	0.86	3.25	10365	1258	2	11	0	0	0	logfile
✔	8i9L	35275	2024-12-28	2023-02-07	3.18	2.32	2.37	3.2	0.003	0.58	0.0	0.04	12.92	0.00	2.235	8.98	0.96	4.6	95.4	0.0	0.32	0.78	0.75	2.64	3.2	0.004	0.62	0.0	0.04	14.72	0.00	2.563	6.87	1.91	4.7	95.3	0.0	0.11	0.33	0.79	0.79	2.81	8617	1183	6	0	0	0	0	logfile
✔	8G3F	29694	2024-12-31	2023-02-07	3.7	3.93	3.85	3.9	0.005	0.79	0.0	0.04	16.24	0.00	2.148	8.08	0.90	6.0	94.0	0.0	0.23	0.68	0.71	1.06	3.9	0.003	0.74	0.0	0.04	17.33	0.00	2.378	8.86	2.37	5.6	94.4	0.0	0.51	1.37	0.68	0.74	0.97	14442	1791	7	0	4	0	0	logfile
✔	8i9U	35284	2024-12-30	2023-02-07	3.1	3.25	3.24	3.3	0.001	0.42	0.0	0.04	15.88	0.00	2.250	4.20	1.78	12.1	87.2	0.7	-2.67	0.56	0.55	0.11	3.3	0.004	0.72	0.0	0.04	16.83	0.00	2.418	5.50	1.85	6.2	93.7	0.1	-0.46	1.35	0.69	0.74	0.76	65141	8483	28	0	10	0	0	logfile
✔	8G3G	29695	2024-12-27	2023-02-07	3.5	3.73	2.78	3.7	0.007	1.15	2.0	0.08	19.09	0.01	2.216	12.71	9.45	8.0	92.0	0.0	-2.51	0.76	0.73	1.09	3.6	0.004	0.85	0.0	0.05	18.10	0.00	2.517	14.06	8.90	8.4	91.6	0.0	-2.26	1.16	0.77	0.75	1.27	7020	900	10	0	0	0	0	logfile
✔	8G3A	29690	2024-12-31	2023-02-07	3.4	3.69	3.48	3.7	0.005	0.72	0.0	0.04	15.96	0.00	2.088	6.37	0.06	5.8	94.0	0.1	0.42	0.60	0.71	1.20	3.7	0.004	0.57	0.0	0.04	17.04	0.00	2.441	4.70	2.11	6.4	93.5	0.1	0.86	0.37	0.60	0.82	0.76	14442	1791	7	0	4	0	0	logfile
✔	8G3H	29699	2024-12-27	2023-02-07	3.6	3.80	3.20	3.8	0.016	2.32	9.0	0.26	17.25	0.02	2.228	13.55	4.37	8.7	91.3	0.0	-4.03	0.59	0.52	0.65	3.8	0.003	1.09	0.0	0.09	17.86	0.00	2.389	15.07	2.86	3.6	96.4	0.0	-1.36	2.58	0.61	0.54	1.10	6541	841	2	0	2	0	0	logfile
✔	8G3B	29691	2024-12-31	2023-02-07	3.5	3.74	3.54	3.7	0.004	0.66	0.0	0.04	15.66	0.00	2.251	5.75	0.26	5.6	94.4	0.0	0.87	0.63	0.74	1.39	3.7	0.003	0.55	0.0	0.04	17.05	0.00	2.562	4.72	1.66	5.0	94.9	0.1	1.25	0.37	0.62	0.75	0.91	14395	1791	7	0	3	0	0	logfile
✔	8CHF	16660	2024-12-30	2023-02-07	4.25	2.79	4.08	1.9	0.006	0.81	0.0	0.05	14.54	0.00	2.136	23.74	0.00	4.9	95.1	0.0	-0.37	0.69	0.68	—	1.9	0.003	0.75	0.0	0.05	13.70	0.00	2.500	17.94	0.00	4.6	95.4	0.0	-0.66	1.49	0.67	0.69	—	12628	1572	8	0	2	0	0	logfile
✔	8i9Q	35280	2024-12-27	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.004	0.81	0.0	0.05	14.19	0.00	2.431	13.29	0.00	10.0	90.0	0.0	-1.34	1.36	0.46	0.60	—	5179	675	2	0	0	0	0	logfile
✔	8CHB	16659	2024-12-28	2023-02-07	3.14	3.61	3.17	3.5	0.012	1.75	2.0	0.09	15.26	0.01	2.512	3.80	1.64	3.6	96.4	0.0	-1.52	0.72	0.77	2.69	3.5	0.004	0.67	0.0	0.04	16.43	0.00	2.555	5.95	2.04	2.6	97.4	0.0	2.14	2.23	0.74	0.80	1.62	8916	1158	2	0	0	0	0	logfile
✔	8iA2	35292	2024-12-28	2023-02-07	3.21	2.39	2.33	3.3	0.005	0.76	0.0	0.04	13.19	0.00	2.166	7.08	0.49	7.1	92.9	0.0	-1.13	0.77	0.74	2.82	3.3	0.003	0.69	0.0	0.04	14.96	0.00	2.524	7.98	4.13	5.4	94.6	0.0	-0.15	0.47	0.76	0.73	1.57	8653	1203	6	0	0	0	0	logfile
✔	8i9S	35282	2024-12-28	2023-02-07	3.26	3.55	3.33	3.6	0.002	0.56	0.0	0.04	12.77	0.00	2.260	5.60	0.00	4.5	95.5	0.0	0.32	0.68	0.75	2.20	3.6	0.004	0.66	0.0	0.05	15.02	0.00	2.575	4.07	1.64	5.5	94.5	0.0	0.32	1.52	0.71	0.80	2.31	8123	1113	5	0	0	0	0	logfile
✔	8i9A	35263	2024-12-28	2023-02-06	3.57	3.85	3.66	3.9	0.004	0.76	0.0	0.05	14.16	0.01	1.959	6.87	1.19	3.5	96.5	0.0	-0.11	0.66	0.76	2.90	3.9	0.005	0.76	0.0	0.05	15.10	0.00	2.474	9.63	3.22	4.7	95.3	0.0	0.63	0.53	0.66	0.77	1.97	8409	1130	7	0	1	0	0	logfile
✔	8i9H	35272	2024-12-27	2023-02-06	3.6	3.94	3.50	3.9	0.006	0.71	0.0	0.05	16.88	0.00	2.135	8.35	7.58	9.6	90.4	0.0	-4.33	0.67	0.82	2.13	4.0	0.002	0.69	0.0	0.04	16.77	0.00	2.331	5.20	2.19	4.3	95.7	0.0	-0.81	1.18	0.70	0.83	1.48	6514	780	9	0	13	0	0	logfile
✔	8i9F	35269	2024-12-27	2023-02-06	2.9	3.26	2.71	3.2	0.004	0.62	0.0	0.05	16.78	0.00	2.204	4.56	5.51	4.8	95.1	0.1	-2.86	0.73	0.87	2.23	3.2	0.003	0.66	0.0	0.04	16.75	0.00	2.147	4.08	2.83	4.9	95.1	0.0	-0.03	0.40	0.72	0.87	1.89	6415	764	9	0	13	0	0	logfile
✔	8G2Y	29684	2024-12-30	2023-02-06	3.44	3.81	3.54	3.8	0.004	0.76	0.0	0.04	15.56	0.00	2.204	4.67	0.00	4.5	95.5	0.0	-1.42	0.58	0.76	2.31	3.9	0.004	0.56	0.0	0.04	15.63	0.00	2.251	8.64	3.82	6.4	93.6	0.0	-1.17	0.36	0.56	0.79	2.32	13019	891	6	0	1	0	6342	logfile
✔	8G2V	29682	2024-12-27	2023-02-06	2.715	2.36	2.41	3.0	0.005	0.64	0.0	0.06	16.26	0.00	2.486	8.31	0.00	5.3	94.7	0.0	-3.75	0.45	0.81	7.19	3.0	0.003	0.72	0.0	0.06	17.31	0.00	2.605	15.43	3.89	3.7	96.3	0.0	-3.19	0.67	0.44	0.83	7.56	1660	210	10	0	0	0	0	logfile
✔	8i97	35259	2024-12-28	2023-02-06	3.19	3.43	3.21	3.5	0.005	0.61	1.0	0.05	12.74	0.00	2.261	7.89	0.13	5.2	94.8	0.0	0.00	0.68	0.78	2.78	3.5	0.004	0.59	0.0	0.04	14.49	0.00	2.529	7.44	1.64	4.6	95.4	0.0	0.06	1.12	0.68	0.79	2.42	8130	1113	5	0	0	0	0	logfile
✔	8i9G	35270	2024-12-27	2023-02-06	3.2	3.67	3.09	3.6	0.005	0.67	0.0	0.05	16.41	0.00	2.213	4.97	4.97	6.6	93.4	0.0	-3.28	0.72	0.83	2.49	3.6	0.003	0.64	0.0	0.04	16.54	0.00	2.450	2.68	3.51	5.5	94.5	0.0	-0.22	0.41	0.71	0.83	2.46	6507	778	9	0	13	0	0	logfile

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