Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i9E	35268	2024-12-27	2023-02-06	3.2	3.50	3.01	3.5	0.008	0.74	0.0	0.05	16.27	0.00	2.266	4.96	4.76	9.7	90.3	0.0	-3.37	0.59	0.83	2.70	3.5	0.002	0.58	0.0	0.04	16.36	0.00	2.530	2.88	2.23	4.9	95.1	0.0	-0.22	0.33	0.57	0.82	2.33	6421	764	9	0	13	0	0	logfile
✔	8i9F	35269	2024-12-27	2023-02-06	2.9	3.26	2.71	3.2	0.004	0.62	0.0	0.05	16.78	0.00	2.204	4.56	5.51	4.8	95.1	0.1	-2.86	0.73	0.87	2.23	3.2	0.003	0.66	0.0	0.04	16.75	0.00	2.147	4.08	2.83	4.9	95.1	0.0	-0.03	0.40	0.72	0.87	1.89	6415	764	9	0	13	0	0	logfile
✔	8CGG	16642	2024-12-27	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	8CGH	16643	2024-12-27	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.004	0.86	0.0	0.04	17.20	0.00	2.640	0.97	0.80	6.4	93.6	0.0	-4.90	0.93	0.53	0.93	6.66	2710	400	5	0	0	0	0	logfile
✔	8CG3	16628	2024-12-27	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	8i88	35241	2024-12-28	2023-02-03	3.7	3.96	3.63	3.9	0.003	0.66	0.0	0.04	16.50	0.01	2.077	9.42	0.38	4.0	95.9	0.1	0.14	0.74	0.79	1.45	3.9	0.003	0.64	0.0	0.04	17.25	0.00	2.410	7.84	3.92	4.4	95.4	0.1	0.17	0.92	0.71	0.79	1.53	7287	883	3	2	0	0	0	logfile
✔	8i7W	35235	2024-12-28	2023-02-02	3.39	3.59	3.41	3.7	0.004	0.61	0.0	0.04	18.05	0.00	2.159	11.93	0.55	3.5	96.4	0.1	-0.49	0.66	0.80	1.92	3.7	0.003	0.74	0.0	0.05	18.29	0.00	2.316	10.86	4.81	4.2	95.7	0.1	-0.58	1.37	0.67	0.81	1.86	8461	1080	6	0	1	0	0	logfile
✔	8G1i	29671	2024-12-30	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	21.47	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.002	0.55	0.0	0.04	21.19	0.00	2.500	4.01	2.84	4.8	95.2	0.0	-0.53	1.14	0.75	0.79	2.00	13613	1298	4	142	0	0	0	logfile
✔	8CEZ	16614	2024-12-31	2023-02-02	2.97	2.71	3.32	2.7	0.004	0.67	0.0	0.04	13.96	0.00	2.014	8.43	0.00	9.0	90.7	0.3	-1.75	0.53	0.70	2.84	2.7	0.004	0.65	0.0	0.04	16.60	0.01	2.156	6.18	1.05	11.3	88.5	0.2	-1.72	0.38	0.53	0.74	2.27	68244	4404	12	0	0	0	33900	logfile
✔	8CE4	16598	2024-12-30	2023-02-01	2.7	3.26	2.57	3.0	0.004	0.63	0.0	0.04	18.89	0.01	2.159	10.18	2.61	4.6	95.4	0.1	-0.84	0.89	0.90	4.88	3.0	0.003	0.68	0.0	0.04	17.91	0.00	2.492	9.19	1.76	5.7	94.3	0.0	-1.00	0.88	0.85	0.92	4.57	13435	1645	20	0	20	0	0	logfile
✘	8CED	16606	2024-12-28	2023-02-01	4.15	3.12	4.20	3.1	0.009	1.59	17.0	0.11	23.64	0.02	1.725	10.40	3.91	6.4	92.9	0.7	-3.32	0.50	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51964	2928	22	1340	0	0	0	logfile
✔	8CE1	16597	2024-12-29	2023-02-01	3.47	3.70	3.42	3.7	0.006	1.08	0.0	0.06	15.03	0.01	2.189	6.45	0.42	2.7	97.2	0.1	-0.68	0.66	0.82	2.33	3.7	0.003	0.65	0.0	0.04	16.16	0.01	2.325	6.71	1.69	2.3	97.7	0.0	1.76	0.97	0.72	0.87	1.82	11438	1462	8	0	0	0	0	logfile
✔	8G14	29661	2024-12-29	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8G16	29663	2024-12-29	2023-02-01	2.07	2.69	2.04	2.3	0.004	0.79	0.0	0.05	16.16	0.01	0.795	4.86	1.21	4.1	95.9	0.0	-1.24	0.88	0.91	5.21	2.3	0.003	0.58	0.0	0.05	16.12	0.01	2.008	10.80	1.86	3.8	96.0	0.2	0.85	1.23	0.88	0.91	5.52	10108	1336	4	0	0	0	4	logfile
✔	8G17	29664	2024-12-29	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✘	8G15	29662	2024-12-29	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10056	1336	4	0	0	0	0	logfile
✔	8CEC	16605	2024-12-28	2023-02-01	3.57	2.84	3.39	2.8	0.010	1.58	12.0	0.11	23.40	0.02	2.182	8.39	4.35	6.1	93.2	0.7	-3.58	0.74	0.71	2.10	2.7	0.004	0.71	0.0	0.04	23.54	0.01	2.121	12.06	4.07	4.3	95.5	0.2	-0.33	1.14	0.70	0.65	1.81	51964	2928	22	1340	0	0	0	logfile
✔	8G12	29659	2024-12-29	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8i7N	35223	2024-12-28	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	8G13	29660	2024-12-29	2023-02-01	2.3	3.09	2.30	2.7	0.004	0.60	0.0	0.05	14.97	0.00	2.083	5.94	0.86	3.9	96.1	0.0	0.94	0.88	0.92	3.62	2.7	0.005	0.54	0.0	0.05	15.56	0.00	2.416	5.04	1.14	3.5	96.5	0.0	0.55	0.25	0.88	0.93	4.78	10008	1336	4	0	0	0	12	logfile

• ← previous
• Page 158 of 436
• next →