Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CE5	16599	2024-12-28	2023-02-01	3.62	3.94	3.59	4.0	0.008	1.42	0.0	0.05	18.25	0.01	2.072	9.37	0.32	4.1	95.5	0.4	-1.59	0.59	0.73	0.72	4.0	0.006	0.83	0.0	0.05	18.25	0.01	1.890	13.37	3.34	5.2	94.6	0.2	-0.12	0.46	0.65	0.78	0.72	8979	1146	8	0	4	0	0	logfile
✔	8G14	29661	2024-12-29	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8G17	29664	2024-12-29	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✔	8CEA	16602	2024-12-28	2023-02-01	3.94	4.21	3.99	4.2	0.005	1.11	0.0	0.05	14.35	0.01	2.254	6.13	0.00	4.6	95.4	0.0	-1.36	0.65	0.78	0.81	4.2	0.003	0.82	0.0	0.04	16.97	0.00	2.532	10.07	3.75	4.4	95.6	0.0	0.55	0.63	0.64	0.83	0.82	8970	1153	6	0	0	0	0	logfile
✔	8CE4	16598	2024-12-30	2023-02-01	2.7	3.26	2.57	3.0	0.004	0.63	0.0	0.04	18.89	0.01	2.159	10.18	2.61	4.6	95.4	0.1	-0.84	0.89	0.90	4.88	3.0	0.003	0.68	0.0	0.04	17.91	0.00	2.492	9.19	1.76	5.7	94.3	0.0	-1.00	0.88	0.85	0.92	4.57	13435	1645	20	0	20	0	0	logfile
✔	8G12	29659	2024-12-29	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8i7N	35223	2024-12-28	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	8CDJ	16575	2024-12-30	2023-01-31	3.4	2.42	3.23	2.1	0.003	0.57	0.0	0.04	13.02	0.00	2.173	4.91	0.00	1.5	98.5	0.0	1.53	0.80	0.79	2.48	2.1	0.003	0.58	0.0	0.04	15.35	0.00	2.465	4.36	1.92	2.2	97.8	0.0	1.84	0.39	0.81	0.82	1.95	13623	2001	5	0	0	0	0	logfile
✔	8G07	29648	2024-12-28	2023-01-31	2.8	3.02	2.81	3.0	0.008	0.71	1.0	0.04	13.98	0.01	2.253	7.46	1.15	2.5	97.5	0.0	1.07	0.64	0.80	2.47	3.0	0.003	0.55	0.0	0.04	15.82	0.00	2.618	9.11	2.88	1.4	98.6	0.0	3.68	0.41	0.65	0.83	1.68	7467	1045	13	0	1	0	0	logfile
✔	8G05	29645	2024-12-28	2023-01-31	3.0	3.16	2.98	3.1	0.007	0.91	0.0	0.14	14.31	0.01	2.257	4.54	0.62	3.6	96.4	0.0	-3.23	0.64	0.77	3.11	3.1	0.003	0.66	0.0	0.04	16.36	0.00	2.495	7.63	2.69	2.7	97.3	0.0	-0.20	0.57	0.64	0.78	2.89	8944	1140	6	0	2	0	0	logfile
✔	8CDP	16592	2024-12-27	2023-01-31	3.4	4.25	3.44	3.9	0.003	0.78	1.0	0.05	12.96	0.00	2.247	11.14	0.36	2.3	97.7	0.0	0.12	0.89	0.83	2.17	3.9	0.004	0.68	0.0	0.04	14.69	0.00	2.468	9.49	1.42	3.1	96.9	0.0	-0.04	0.43	0.90	0.84	1.68	5200	654	2	0	0	0	0	logfile
✔	8G0B	29652	2024-12-28	2023-01-31	2.8	2.96	2.80	3.0	0.008	0.70	0.0	0.04	15.19	0.00	2.221	7.63	0.14	2.9	97.1	0.0	0.73	0.67	0.83	2.51	3.0	0.004	0.67	0.0	0.04	15.00	0.00	2.565	11.25	1.72	2.7	97.3	0.0	3.13	0.42	0.67	0.85	1.35	7758	1044	19	0	7	0	0	logfile
✔	8G04	29644	2024-12-28	2023-01-31	3.4	3.70	3.42	3.6	0.005	0.66	0.0	0.04	11.25	0.01	2.229	6.36	2.28	3.2	96.8	0.0	0.42	0.82	0.82	2.73	3.6	0.003	0.68	0.0	0.04	13.24	0.00	2.505	6.01	2.55	3.6	96.4	0.0	0.55	0.41	0.82	0.82	2.21	7314	944	5	0	12	0	0	logfile
✔	8FZT	29639	2024-12-30	2023-01-30	3.03	2.19	3.20	2.1	0.004	0.63	0.0	0.04	20.77	0.00	2.205	5.74	0.68	6.9	93.1	0.0	-1.36	0.78	0.78	2.09	2.1	0.003	0.56	0.0	0.04	20.62	0.00	2.506	3.55	2.12	5.1	94.9	0.0	-0.59	0.34	0.76	0.79	2.28	13925	1319	5	149	0	0	0	logfile
✔	8CDD	16569	2024-12-30	2023-01-30	3.0	3.95	—	3.5	0.003	0.66	0.0	0.04	17.78	0.00	2.169	13.80	3.61	5.6	94.4	0.0	-0.95	0.86	0.80	1.56	3.5	0.003	0.74	0.0	0.05	17.54	0.00	2.286	11.33	3.74	6.3	93.7	0.0	-0.78	0.92	0.86	0.81	1.82	13139	1633	5	0	0	0	0	logfile
✔	8CDE	16570	2024-12-29	2023-01-30	3.1	4.00	—	3.7	0.003	0.71	0.0	0.05	16.55	0.00	2.129	8.14	3.94	7.8	92.2	0.0	-1.84	0.82	0.74	1.88	3.7	0.004	0.72	0.0	0.04	16.82	0.00	2.475	11.11	4.36	6.3	93.7	0.0	-1.25	0.52	0.83	0.77	2.09	10464	1317	4	0	0	0	0	logfile
✔	8i6R	35204	2024-12-28	2023-01-29	4.0	5.22	4.04	4.2	0.006	1.03	0.0	0.04	15.43	0.00	1.797	22.17	1.66	6.8	93.1	0.1	-0.44	0.75	0.84	—	4.3	0.004	0.82	0.0	0.04	16.88	0.00	2.112	16.22	3.69	7.5	92.4	0.1	-0.24	0.96	0.75	0.85	—	7757	1011	6	0	3	0	0	logfile
✔	8i6o	35201	2024-12-28	2023-01-29	3.8	4.30	4.03	4.2	0.003	0.66	0.0	0.04	15.30	0.00	2.135	8.12	0.61	4.3	95.7	0.0	0.14	0.74	0.81	0.86	4.2	0.003	0.72	0.0	0.04	17.68	0.00	2.135	8.23	3.48	4.6	95.4	0.0	0.45	1.19	0.74	0.82	0.70	9084	1196	5	0	0	0	0	logfile
✔	8i6S	35205	2024-12-28	2023-01-29	4.4	4.82	4.39	4.4	0.006	1.39	2.0	0.06	16.40	0.01	2.073	4.55	0.97	4.1	95.7	0.2	-5.18	0.73	0.60	—	4.4	0.002	0.71	0.0	0.04	16.03	0.00	1.912	9.97	1.08	3.9	96.1	0.1	0.17	0.49	0.74	0.63	—	8641	1125	7	0	4	0	0	logfile
✔	8FZQ	29637	2024-12-29	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	15.43	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.002	0.60	0.0	0.04	14.66	0.00	1.962	8.63	0.10	2.1	97.9	0.0	1.13	0.99	0.63	0.77	—	9244	1133	3	0	23	0	0	logfile

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