Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CAD	16524	2024-12-30	2023-01-24	2.85	2.57	2.81	2.7	0.003	0.59	0.0	0.05	11.54	0.00	2.115	5.66	0.00	1.8	98.2	0.0	0.82	0.69	0.81	3.81	2.7	0.003	0.56	0.0	0.04	14.34	0.00	2.135	3.34	1.96	3.0	97.0	0.0	0.58	0.63	0.70	0.85	3.84	64084	3816	30	0	78	766	31062	logfile
✔	8FXB	29530	2024-12-28	2023-01-24	3.1	3.37	3.14	3.5	0.011	1.21	1.0	0.07	10.52	0.01	2.024	5.30	0.59	3.2	96.4	0.4	-0.59	0.64	0.70	2.98	3.5	0.005	0.71	0.0	0.04	14.75	0.00	2.496	6.34	1.54	4.6	95.4	0.0	0.11	1.19	0.65	0.76	2.55	7912	976	6	0	7	0	0	logfile
✔	8FXC	29531	2024-12-28	2023-01-24	3.2	3.50	3.23	3.6	0.011	1.40	3.0	0.10	11.35	0.01	2.403	4.68	1.91	3.3	96.0	0.7	-1.21	0.67	0.74	3.85	3.6	0.003	0.60	0.0	0.04	13.94	0.00	2.190	4.54	1.32	2.8	97.2	0.0	0.40	0.54	0.68	0.79	3.11	7639	1002	6	0	8	0	0	logfile
✔	8CA1	16515	2024-12-28	2023-01-24	3.9	3.75	4.03	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.002	0.64	0.0	0.04	15.91	0.00	2.494	8.43	1.49	2.0	98.0	0.0	2.40	1.98	0.77	0.80	1.93	9036	1178	4	0	2	0	0	logfile
✔	8CAU	16534	2024-12-30	2023-01-24	3.4	4.09	3.51	3.8	0.003	0.52	0.0	0.04	16.19	0.00	2.033	21.48	0.14	8.4	91.6	0.0	-3.17	0.90	0.89	4.04	3.8	0.005	0.79	0.0	0.05	15.42	0.00	2.467	6.11	1.06	8.2	91.8	0.0	-1.78	1.01	0.89	0.92	3.61	13545	1635	20	0	25	0	0	logfile
✔	8CAX	16535	2024-12-27	2023-01-24	3.7	3.92	3.26	4.2	0.009	1.65	6.0	0.09	14.83	0.01	2.271	8.26	4.55	9.6	90.4	0.0	-3.97	0.46	0.83	4.11	4.2	0.005	0.99	0.0	0.05	16.36	0.01	2.535	11.81	3.54	8.7	91.3	0.0	-2.49	3.38	0.39	0.77	4.36	3444	450	6	0	0	0	0	logfile
✔	8CAQ	16532	2024-12-27	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.7	0.008	0.72	0.0	0.05	14.17	0.00	2.529	2.05	0.30	2.5	97.5	0.0	-2.02	0.58	0.47	0.93	6.67	2870	375	5	0	0	0	0	logfile
✔	8C9X	16513	2024-12-30	2023-01-23	2.3	3.14	2.24	2.8	0.004	0.68	0.0	0.05	17.44	0.00	2.143	9.34	2.46	3.1	96.9	0.0	-1.03	0.87	0.92	4.69	2.8	0.006	1.08	2.0	0.06	17.03	0.00	2.220	7.40	2.89	4.4	95.6	0.0	-0.81	0.38	0.82	0.91	5.14	13485	1635	20	0	20	0	0	logfile
✔	8FWT	29518	2024-12-30	2023-01-23	3.09	3.38	3.14	3.4	0.007	1.04	0.0	0.07	16.22	0.01	2.333	2.08	0.82	8.0	92.0	0.0	-5.70	0.65	0.78	3.60	3.4	0.004	0.68	0.0	0.05	13.85	0.00	2.439	5.55	1.94	7.0	93.0	0.0	-1.00	1.35	0.71	0.84	3.51	12606	1532	16	0	30	0	0	logfile
✔	8FX4	29523	2024-12-30	2023-01-23	3.9	2.80	4.14	2.5	0.004	0.91	0.0	0.05	18.48	0.00	2.117	13.89	0.80	7.7	91.9	0.4	-1.50	0.73	0.72	1.18	2.4	0.006	0.90	0.0	0.05	18.87	0.00	2.369	12.11	4.69	10.1	89.7	0.2	-1.36	0.47	0.73	0.73	1.03	13474	1645	6	0	2	0	0	logfile
✔	8FWW	29521	2024-12-31	2023-01-23	3.1	3.34	3.12	3.4	0.013	1.64	0.0	0.12	20.28	0.01	2.206	6.04	1.17	9.7	90.3	0.0	-5.95	0.59	0.76	2.91	3.4	0.004	0.72	0.0	0.04	17.36	0.00	2.368	8.26	2.76	8.6	91.4	0.0	-0.70	0.98	0.66	0.84	2.14	14471	1680	14	0	49	0	0	logfile
✔	8FWV	29520	2024-12-30	2023-01-23	3.03	3.27	3.07	3.3	0.007	1.07	0.0	0.10	14.82	0.01	2.334	3.96	1.19	7.3	92.4	0.3	-5.20	0.68	0.81	4.53	3.3	0.004	0.68	0.0	0.05	14.06	0.00	2.456	5.72	2.76	5.1	94.9	0.0	-1.08	0.62	0.72	0.87	3.33	12584	1532	16	0	28	0	0	logfile
✔	8FX5	29524	2024-12-28	2023-01-23	2.45	3.11	2.28	2.8	0.004	0.82	0.0	0.05	12.50	0.01	2.299	2.42	0.11	2.0	98.0	0.0	-0.73	0.76	0.90	4.91	2.8	0.003	0.63	0.0	0.04	14.73	0.00	2.361	5.06	1.48	1.7	98.3	0.0	1.34	0.99	0.75	0.91	4.32	8818	1127	9	0	2	47	0	logfile
✔	8FWR	29516	2024-12-30	2023-01-23	3.1	3.33	3.13	3.5	0.008	1.10	0.0	0.07	19.32	0.01	2.334	2.19	0.00	7.7	91.7	0.5	-5.62	0.63	0.73	3.45	3.4	0.003	0.67	0.0	0.04	14.09	0.00	2.422	5.22	1.72	5.4	94.5	0.1	-0.63	1.20	0.63	0.76	2.90	12628	1532	16	0	32	0	0	logfile
✔	8FWS	29517	2024-12-31	2023-01-23	3.23	3.47	3.26	3.5	0.012	1.62	0.0	0.12	19.90	0.01	2.250	4.96	0.55	8.5	91.1	0.4	-5.96	0.65	0.74	3.06	3.5	0.003	0.71	0.0	0.04	18.24	0.00	2.339	8.79	2.14	6.8	93.0	0.2	-0.72	1.17	0.72	0.82	2.44	14416	1680	14	0	46	0	0	logfile
✔	8C9H	16510	2024-12-31	2023-01-22	3.2	3.51	3.35	3.6	0.005	0.59	0.0	0.04	12.20	0.00	2.324	4.83	0.44	3.9	96.1	0.0	2.63	0.70	0.88	2.95	3.6	0.002	0.53	0.0	0.04	14.00	0.01	2.638	4.77	1.76	4.0	96.0	0.0	2.86	0.30	0.69	0.89	2.22	15776	2024	16	0	8	0	0	logfile
✔	8FWK	29511	2024-12-29	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	4.1	0.003	0.73	0.0	0.04	15.62	0.00	2.557	9.30	2.67	10.2	89.7	0.2	-0.68	1.46	0.68	0.77	0.85	9462	1194	2	0	0	0	0	logfile
✔	8C90	16497	2024-12-30	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.61	1.0	0.03	22.88	0.00	2.037	9.41	2.48	6.8	93.1	0.0	-0.65	0.46	0.81	0.84	1.83	64726	2183	22	2219	0	0	0	logfile
✔	8C94	16501	2024-12-28	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	22.44	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.8	0.006	0.73	0.0	0.04	23.06	0.01	1.968	18.02	4.23	9.0	91.0	0.0	-1.86	1.41	0.81	0.84	1.18	54560	2070	21	1787	0	0	0	logfile
✔	8C91	16498	2024-12-29	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.70	0.0	0.04	23.95	0.01	1.982	24.99	0.00	10.3	89.7	0.1	-1.98	0.94	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile

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