Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C90	16497	2024-12-30	2023-01-21	3.15	3.51	3.31	3.1	0.002	0.38	0.0	0.03	22.69	0.00	1.866	5.45	0.00	5.1	94.8	0.0	0.48	0.79	0.79	1.77	3.2	0.005	0.61	1.0	0.03	22.88	0.00	2.037	9.41	2.48	6.8	93.1	0.0	-0.65	0.46	0.81	0.84	1.83	64726	2183	22	2219	0	0	0	logfile
✔	8i4Z	35189	2024-12-27	2023-01-21	3.97	3.62	3.92	3.8	0.012	1.81	8.0	0.10	12.61	0.02	2.548	0.06	0.74	3.8	96.2	0.0	-0.79	0.81	0.73	2.91	3.8	0.003	0.61	0.0	0.04	14.37	0.00	2.288	3.57	1.28	3.6	96.4	0.0	0.16	1.59	0.84	0.79	1.79	48977	3374	3	0	1	0	24348	logfile
✔	8C91	16498	2024-12-29	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.70	0.0	0.04	23.95	0.01	1.982	24.99	0.00	10.3	89.7	0.1	-1.98	0.94	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	8C96	16503	2024-12-26	2023-01-21	4.43	5.03	4.86	4.4	0.001	0.36	0.0	0.03	22.54	0.00	1.928	6.57	0.08	3.8	96.1	0.1	0.57	0.83	0.79	—	4.4	0.005	0.68	0.0	0.04	23.95	0.01	2.029	27.50	0.00	8.5	91.5	0.0	-1.99	0.94	0.84	0.85	—	44214	1607	16	1475	0	0	0	logfile
✔	8i4Y	35188	2024-12-27	2023-01-21	3.84	3.60	3.74	3.6	0.012	1.83	12.0	0.10	12.83	0.02	2.536	0.04	1.16	3.9	96.1	0.0	-0.81	0.80	0.73	2.97	3.6	0.002	0.60	0.0	0.04	14.32	0.00	2.385	2.98	0.74	2.8	97.2	0.0	0.43	1.56	0.82	0.79	1.59	49016	3374	4	0	4	0	24348	logfile
✔	8C8K	16482	2024-12-29	2023-01-20	2.87	2.34	2.70	2.8	0.013	1.50	0.0	0.08	13.31	0.01	2.261	10.98	0.63	1.9	98.1	0.0	-1.75	0.29	0.70	3.14	2.8	0.006	0.79	0.0	0.05	16.99	0.00	2.314	9.15	4.25	3.0	97.0	0.0	-1.81	0.63	0.35	0.78	3.77	11430	1518	6	0	0	0	0	logfile
✔	8C8L	16483	2024-12-29	2023-01-20	2.71	2.35	2.64	2.7	0.014	1.59	24.0	0.08	13.76	0.01	1.144	8.21	0.76	4.1	95.9	0.0	-1.13	0.59	0.81	4.21	2.6	0.004	0.66	0.0	0.05	15.99	0.00	2.528	4.29	2.45	3.1	96.9	0.0	-0.58	1.60	0.63	0.84	4.37	59076	7962	6	0	0	0	0	logfile
✔	8C8P	16490	2024-12-27	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.002	0.69	0.0	0.04	12.74	0.00	2.623	8.99	0.00	3.5	96.5	0.0	-1.34	1.11	0.67	0.71	—	2449	314	2	0	0	0	0	logfile
✔	8i4H	35173	2024-12-27	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.8	0.006	1.24	1.0	0.06	14.26	0.01	2.084	19.66	3.34	12.1	87.9	0.0	-3.22	1.85	0.72	0.68	1.34	6539	833	2	0	0	0	0	logfile
✘	8i4A	35167	2024-12-29	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9763	1218	2	0	1	0	0	logfile
✔	8C89	16473	2024-12-27	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.004	0.86	0.0	0.05	13.54	0.01	2.401	25.25	0.00	11.0	89.0	0.0	-2.05	0.56	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8i4G	35172	2024-12-27	2023-01-19	3.68	2.81	3.67	3.8	0.002	0.63	0.0	0.04	10.19	0.00	2.246	6.82	5.71	9.0	91.0	0.0	-4.78	0.68	0.65	1.56	3.2	0.006	1.19	1.0	0.05	14.90	0.00	2.374	19.54	4.36	11.9	88.1	0.0	-3.43	1.84	0.70	0.68	1.67	6057	768	2	0	0	0	0	logfile
✘	8i42	35162	2024-12-30	2023-01-18	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14060	1560	10	0	40	0	0	logfile
✔	8i47	35163	2024-12-30	2023-01-18	2.7	3.00	2.61	2.9	0.004	0.84	0.0	0.05	21.44	0.01	2.184	11.54	1.00	4.8	95.2	0.0	-1.87	0.66	0.85	2.27	2.9	0.004	0.84	1.0	0.05	18.94	0.00	2.339	7.05	1.14	2.5	97.4	0.1	0.93	0.40	0.67	0.77	2.69	13695	1560	15	0	30	30	0	logfile
✔	8i3V	35157	2024-12-28	2023-01-18	2.85	3.23	2.85	3.2	0.003	0.54	0.0	0.04	16.33	0.00	2.029	3.98	2.16	2.2	97.6	0.2	1.90	0.59	0.81	3.09	3.2	0.003	0.53	0.0	0.04	15.78	0.00	2.466	2.16	0.87	1.8	98.0	0.2	1.86	0.34	0.53	0.78	3.26	8792	548	2	0	2	11	4373	logfile
✔	8i49	35165	2024-12-28	2023-01-18	2.41	2.54	2.47	2.5	0.015	1.46	29.0	0.09	16.84	0.01	2.263	7.48	0.43	6.1	93.8	0.2	-1.51	0.75	0.85	4.17	2.5	0.005	0.65	0.0	0.05	16.30	0.00	2.300	2.46	0.61	4.3	95.5	0.2	-0.06	0.41	0.73	0.83	3.89	50754	3180	12	0	6	0	25248	logfile
✔	8i48	35164	2024-12-30	2023-01-18	2.74	3.16	2.71	3.0	0.005	0.89	0.0	0.06	23.41	0.01	2.243	13.18	0.36	4.6	95.4	0.0	-1.37	0.71	0.85	2.60	3.0	0.004	0.88	1.0	0.05	19.37	0.00	1.853	6.73	1.49	3.1	96.9	0.0	0.92	0.33	0.76	0.88	2.95	14270	1560	15	0	45	160	0	logfile
✘	8BQW	16189	2024-12-31	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	8C81	16468	2024-12-31	2023-01-18	3.3	3.77	3.41	3.7	0.004	0.61	0.0	0.05	16.33	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.53	0.0	0.04	15.49	0.00	2.467	3.11	0.94	3.6	96.4	0.0	1.01	0.28	0.74	0.87	1.84	15709	1938	8	0	6	0	0	logfile
✘	8BQV	16188	2024-12-28	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile

• ← previous
• Page 162 of 436
• next →