Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8i42	35162	2024-12-30	2023-01-18	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14060	1560	10	0	40	0	0	logfile
✔	8C81	16468	2024-12-31	2023-01-18	3.3	3.77	3.41	3.7	0.004	0.61	0.0	0.05	16.33	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.53	0.0	0.04	15.49	0.00	2.467	3.11	0.94	3.6	96.4	0.0	1.01	0.28	0.74	0.87	1.84	15709	1938	8	0	6	0	0	logfile
✔	8i48	35164	2024-12-30	2023-01-18	2.74	3.16	2.71	3.0	0.005	0.89	0.0	0.06	23.41	0.01	2.243	13.18	0.36	4.6	95.4	0.0	-1.37	0.71	0.85	2.60	3.0	0.004	0.88	1.0	0.05	19.37	0.00	1.853	6.73	1.49	3.1	96.9	0.0	0.92	0.33	0.76	0.88	2.95	14270	1560	15	0	45	160	0	logfile
✘	8BQV	16188	2024-12-28	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8i49	35165	2024-12-28	2023-01-18	2.41	2.54	2.47	2.5	0.015	1.46	29.0	0.09	16.84	0.01	2.263	7.48	0.43	6.1	93.8	0.2	-1.51	0.75	0.85	4.17	2.5	0.005	0.65	0.0	0.05	16.30	0.00	2.300	2.46	0.61	4.3	95.5	0.2	-0.06	0.41	0.73	0.83	3.89	50754	3180	12	0	6	0	25248	logfile
✔	8i3U	35156	2024-12-27	2023-01-18	3.6	3.90	3.39	3.8	0.002	0.54	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.003	0.64	0.0	0.04	15.09	0.01	2.548	10.95	1.36	3.5	96.5	0.0	-0.37	0.74	0.68	0.77	2.35	3408	437	4	0	1	0	0	logfile
✔	8i3Q	35154	2024-12-28	2023-01-17	3.1	3.03	2.94	3.1	0.005	0.83	0.0	0.05	22.35	0.02	1.762	14.07	5.39	7.2	92.8	0.0	0.08	0.79	0.76	3.10	3.0	0.002	0.57	0.0	0.03	21.72	0.00	2.513	6.61	1.16	4.8	95.2	0.0	1.67	1.99	0.80	0.79	2.33	6998	595	3	95	1	0	0	logfile
✔	8i3D	35150	2024-12-28	2023-01-17	2.81	3.08	2.87	3.1	0.009	0.99	2.0	0.06	13.50	0.01	2.328	2.52	0.83	5.6	94.4	0.0	-5.74	0.67	0.88	3.66	3.1	0.005	0.68	0.0	0.05	15.65	0.00	2.441	3.75	1.77	4.3	95.7	0.0	-0.14	0.42	0.65	0.89	3.35	8798	1132	2	0	0	0	0	logfile
✔	8i3S	35155	2024-12-27	2023-01-17	3.9	4.12	3.88	4.1	0.003	0.59	0.0	0.05	11.40	0.00	2.235	14.76	2.54	2.9	97.1	0.0	-1.18	0.64	0.72	2.12	4.1	0.004	0.73	0.0	0.05	16.05	0.00	2.433	14.76	5.65	5.3	94.7	0.0	-1.15	2.28	0.65	0.73	1.19	3272	420	4	0	1	0	0	logfile
✔	8i3C	35149	2024-12-28	2023-01-16	2.85	3.26	3.03	3.2	0.009	1.02	0.0	0.06	15.63	0.01	2.313	4.42	1.81	6.4	93.6	0.0	-6.17	0.66	0.86	3.78	3.2	0.004	0.67	0.0	0.04	15.75	0.00	2.552	4.87	2.77	5.4	94.6	0.0	-0.72	1.28	0.60	0.86	2.95	8664	1104	4	0	2	0	0	logfile
✔	8FU3	29452	2024-12-30	2023-01-16	2.88	2.76	2.85	2.9	0.014	1.15	0.0	0.06	10.40	0.00	2.330	1.65	0.07	1.6	97.9	0.5	0.75	0.58	0.76	4.22	2.9	0.004	0.60	0.0	0.04	15.62	0.00	2.505	8.82	1.96	2.6	97.3	0.1	1.25	0.62	0.72	0.85	4.00	13563	1673	6	0	1	0	0	logfile
✔	8i39	35146	2024-12-28	2023-01-16	2.85	3.17	2.93	3.2	0.009	0.90	0.0	0.05	14.17	0.01	2.116	22.50	0.22	6.2	93.8	0.0	-5.71	0.59	0.78	3.76	3.2	0.003	0.70	0.0	0.04	15.57	0.00	2.602	5.79	2.74	4.1	95.9	0.0	-0.76	1.32	0.52	0.76	3.25	8413	1076	3	0	1	0	0	logfile
✔	8i3B	35148	2024-12-28	2023-01-16	3.08	3.71	3.18	3.6	0.008	1.19	0.0	0.06	14.31	0.01	2.249	4.61	1.50	8.8	91.2	0.0	-5.42	0.53	0.78	2.75	3.6	0.003	0.66	0.0	0.04	15.59	0.00	2.573	5.13	2.88	5.7	94.3	0.0	-1.09	0.97	0.52	0.77	2.40	8646	1100	4	0	2	0	0	logfile
✔	8i38	35145	2024-12-28	2023-01-16	2.9	3.23	3.01	3.2	0.006	1.20	4.0	0.07	12.79	0.01	1.981	16.41	0.00	8.8	91.0	0.2	-6.34	0.49	0.71	2.72	3.2	0.003	0.71	0.0	0.04	15.30	0.00	2.537	6.60	1.81	6.9	92.9	0.2	-1.27	1.15	0.51	0.74	1.93	8122	1042	2	0	0	0	0	logfile
✔	8i3A	35147	2024-12-28	2023-01-16	3.04	3.30	3.07	3.3	0.008	1.04	0.0	0.06	14.22	0.01	2.023	2.68	0.00	7.6	92.2	0.2	-4.99	0.65	0.87	3.46	3.3	0.002	0.58	0.0	0.04	15.24	0.00	2.491	4.19	1.56	5.4	94.4	0.2	-0.24	0.39	0.65	0.88	2.99	8830	1124	4	0	4	0	0	logfile
✔	8FU6	29453	2024-12-28	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	3.2	0.003	0.57	0.0	0.04	15.44	0.00	2.524	2.40	1.38	2.9	97.1	0.0	0.72	0.34	0.61	0.84	3.02	8834	1112	6	0	0	0	0	logfile
✔	8C7G	16457	2024-12-29	2023-01-15	3.2	2.28	—	2.1	0.004	0.63	0.0	0.05	13.28	0.00	2.111	4.10	0.00	3.4	96.6	0.0	0.11	0.76	0.74	3.44	2.2	0.002	0.51	0.0	0.04	15.36	0.00	2.579	3.71	1.16	2.1	97.9	0.0	0.78	0.30	0.77	0.75	2.76	11525	1429	3	0	0	0	0	logfile
✔	8FTE	29424	2024-12-31	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.76	0.0	0.04	14.75	0.00	2.519	6.50	5.49	5.2	94.8	0.0	1.67	1.58	0.56	0.57	0.68	14564	2046	22	0	0	0	0	logfile
✔	8i0Z	35114	2024-12-30	2023-01-12	4.33	4.58	4.36	4.4	0.007	0.91	0.0	0.05	12.71	0.01	2.066	6.59	0.29	6.8	93.2	0.0	-1.50	0.78	0.71	—	4.4	0.003	0.68	0.0	0.04	12.78	0.00	2.541	5.85	0.00	6.5	93.5	0.0	-0.73	2.55	0.77	0.70	—	13163	1725	12	0	0	0	0	logfile
✔	8i10	35115	2024-12-30	2023-01-12	3.96	4.21	4.00	4.2	0.006	0.95	0.0	0.06	13.99	0.01	2.172	8.83	0.58	6.4	93.6	0.0	-1.07	0.76	0.78	2.85	4.2	0.004	0.70	0.0	0.04	14.77	0.00	2.398	7.56	3.90	5.8	94.2	0.0	-0.25	0.52	0.78	0.80	2.09	13196	1729	12	0	0	0	0	logfile

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