Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FTi	29433	2024-12-28	2023-01-12	3.5	3.80	3.64	3.7	0.002	0.56	0.0	0.03	18.08	0.00	2.237	9.26	4.55	4.5	95.5	0.0	0.23	0.77	0.75	2.02	3.7	0.004	0.63	0.0	0.04	18.97	0.00	2.492	8.34	5.17	5.8	94.2	0.0	0.26	0.47	0.76	0.77	2.12	8126	737	2	97	0	0	0	logfile
✔	8i0Z	35114	2024-12-30	2023-01-12	4.33	4.58	4.36	4.4	0.007	0.91	0.0	0.05	12.71	0.01	2.066	6.59	0.29	6.8	93.2	0.0	-1.50	0.78	0.71	—	4.4	0.003	0.68	0.0	0.04	12.78	0.00	2.541	5.85	0.00	6.5	93.5	0.0	-0.73	2.55	0.77	0.70	—	13163	1725	12	0	0	0	0	logfile
✔	8i10	35115	2024-12-30	2023-01-12	3.96	4.21	4.00	4.2	0.006	0.95	0.0	0.06	13.99	0.01	2.172	8.83	0.58	6.4	93.6	0.0	-1.07	0.76	0.78	2.85	4.2	0.004	0.70	0.0	0.04	14.77	0.00	2.398	7.56	3.90	5.8	94.2	0.0	-0.25	0.52	0.78	0.80	2.09	13196	1729	12	0	0	0	0	logfile
✔	8i0N	35104	2024-12-28	2023-01-11	3.26	3.46	3.26	3.5	0.006	0.71	0.0	0.04	14.61	0.00	2.273	3.54	0.62	4.6	95.4	0.0	0.08	0.76	0.83	2.70	3.4	0.005	0.62	0.0	0.04	15.31	0.00	2.537	5.04	1.75	4.8	95.2	0.0	0.39	0.42	0.76	0.84	2.60	9141	1190	8	0	0	0	0	logfile
✔	8FSZ	29422	2024-12-31	2023-01-11	3.79	3.93	3.74	3.7	0.007	1.06	0.0	0.06	13.52	0.01	2.030	5.44	0.00	7.5	92.5	0.0	-2.04	0.75	0.78	1.82	3.7	0.002	0.61	0.0	0.04	14.90	0.00	2.599	6.07	1.30	3.3	96.7	0.0	-0.24	1.27	0.77	0.81	2.30	16690	1975	10	0	20	0	0	logfile
✔	8i0Q	35106	2024-12-28	2023-01-11	4.45	4.83	5.07	4.4	0.003	0.59	0.0	0.04	12.56	0.00	2.167	9.44	0.00	5.1	94.9	0.0	-1.41	0.82	0.81	—	4.4	0.002	0.61	0.0	0.04	13.41	0.00	2.585	5.71	0.00	3.5	96.5	0.0	-0.74	0.45	0.82	0.82	—	8842	1192	8	0	0	0	0	logfile
✔	8C60	16449	2024-12-29	2023-01-10	3.4	2.44	3.66	3.2	0.004	0.78	0.0	0.05	17.71	0.01	1.750	16.32	0.80	3.4	96.6	0.0	-0.10	0.71	0.70	1.68	3.1	0.003	0.73	0.0	0.04	18.57	0.00	2.043	13.26	3.36	3.3	96.7	0.0	0.62	1.68	0.72	0.73	1.93	10393	1280	6	0	7	0	0	logfile
✔	8C5U	16443	2024-12-29	2023-01-10	3.62	3.71	3.65	3.7	0.005	0.77	0.0	0.05	18.43	0.00	2.189	7.66	0.00	3.0	97.0	0.0	1.11	0.78	0.81	1.61	3.7	0.004	0.65	0.0	0.04	19.14	0.00	2.491	8.79	1.87	2.9	97.1	0.0	1.01	1.06	0.78	0.82	1.49	11419	1248	6	71	1	0	0	logfile
✔	8FSJ	29419	2024-12-29	2023-01-10	3.65	3.93	3.70	3.9	0.004	0.69	0.0	0.05	16.99	0.00	1.974	7.82	0.00	6.3	93.7	0.0	-1.15	0.70	0.74	1.70	3.9	0.003	0.70	0.0	0.04	14.27	0.00	2.514	7.82	2.57	6.3	93.7	0.0	-1.08	0.47	0.71	0.75	1.66	9855	1257	16	0	28	0	0	logfile
✔	8C5S	16442	2024-12-29	2023-01-10	3.75	3.51	3.79	3.7	0.007	1.04	0.0	0.09	18.48	0.01	1.842	7.99	0.00	4.1	95.9	0.0	0.62	0.66	0.78	2.02	3.7	0.003	0.60	0.0	0.04	19.10	0.00	2.217	7.35	2.05	4.0	96.0	0.0	0.60	1.03	0.66	0.78	1.49	11312	1260	6	62	1	0	0	logfile
✔	8FSP	29421	2024-12-31	2023-01-10	3.79	3.87	3.58	3.8	0.006	0.99	0.0	0.06	15.98	0.01	2.034	4.79	0.00	4.5	95.5	0.0	-1.60	0.78	0.81	2.38	3.7	0.003	0.65	0.0	0.04	16.76	0.00	2.568	7.39	1.14	3.4	96.6	0.0	-0.01	1.25	0.79	0.83	2.58	16685	1975	10	0	20	0	0	logfile
✔	8HZN	35089	2024-12-29	2023-01-09	3.25	2.62	3.24	3.1	0.002	0.49	0.0	0.04	8.51	0.00	2.182	6.40	3.12	5.2	94.7	0.1	-3.99	0.78	0.77	2.37	3.0	0.004	0.72	0.0	0.04	14.36	0.00	2.426	12.37	3.48	6.6	93.3	0.1	-0.23	0.63	0.80	0.82	2.20	10200	1330	4	0	2	0	0	logfile
✘	8FSB	29418	2024-12-31	2023-01-09	2.75	3.19	2.70	3.0	0.004	0.71	0.0	0.05	14.09	0.00	2.031	4.07	0.00	5.3	94.7	0.0	-0.81	0.81	0.82	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16640	1975	10	0	20	0	0	logfile
✔	8HZS	35090	2024-12-27	2023-01-09	3.3	3.29	2.27	3.5	0.003	0.55	0.0	0.05	11.89	0.00	2.235	15.06	0.00	7.1	92.9	0.0	-5.68	0.40	0.80	4.81	3.5	0.003	0.68	0.0	0.05	13.85	0.00	2.576	7.01	6.25	8.9	91.1	0.0	-3.59	1.13	0.38	0.80	4.03	2376	348	6	0	0	0	0	logfile
✔	8FRZ	29411	2024-12-31	2023-01-09	2.75	3.28	2.70	3.1	0.003	0.76	0.0	0.05	13.71	0.00	2.033	3.53	0.00	5.4	94.6	0.0	0.31	0.79	0.84	3.21	3.1	0.003	0.58	0.0	0.04	14.99	0.00	2.601	4.53	2.58	4.1	95.9	0.0	0.79	1.21	0.78	0.85	3.04	16480	1955	10	0	20	0	0	logfile
✔	8FRW	29409	2024-12-31	2023-01-09	2.92	3.40	2.85	3.2	0.005	0.77	0.0	0.05	13.23	0.01	2.032	2.81	0.11	1.5	98.5	0.0	0.72	0.80	0.84	2.23	3.2	0.002	0.57	0.0	0.04	14.19	0.00	2.649	2.42	1.03	2.0	98.0	0.0	1.32	0.59	0.80	0.86	3.06	16680	1975	15	0	20	5	0	logfile
✔	8FRX	29410	2024-12-31	2023-01-09	2.7	3.26	2.58	3.0	0.004	0.77	0.0	0.05	12.62	0.00	2.031	3.29	0.00	3.1	96.9	0.0	0.20	0.80	0.85	3.56	2.9	0.003	0.61	0.0	0.04	13.97	0.00	2.575	3.98	1.36	3.1	96.9	0.0	0.79	0.39	0.80	0.87	3.55	16670	1975	10	0	20	0	0	logfile
✔	8HZB	35087	2024-12-27	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.003	0.61	0.0	0.05	18.29	0.00	2.544	6.89	4.00	10.5	89.5	0.0	-2.74	0.47	0.33	0.73	2.17	2976	432	6	0	0	0	0	logfile
✔	8HZC	35088	2024-12-27	2023-01-08	3.2	3.16	2.79	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	3.3	0.003	0.47	0.0	0.05	16.17	0.00	2.634	5.49	3.85	10.1	89.9	0.0	-3.32	0.91	0.37	0.85	3.48	3108	450	6	0	0	0	0	logfile
✔	8FRP	29404	2024-12-28	2023-01-07	3.8	4.05	3.81	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.003	0.74	0.0	0.04	17.40	0.00	2.460	12.79	3.79	2.0	98.0	0.0	1.05	0.99	0.63	0.83	1.25	7488	934	5	0	21	0	0	logfile

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