Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FQG	29387	2024-12-28	2023-01-06	3.01	2.41	2.83	3.0	0.015	0.73	0.0	0.06	17.67	0.00	2.233	8.45	0.22	2.3	97.7	0.0	-0.50	0.62	0.85	2.69	3.0	0.004	0.55	0.0	0.04	17.24	0.00	2.532	7.08	3.24	2.5	97.5	0.0	-0.20	0.36	0.62	0.85	2.22	8392	1064	16	0	4	10	0	logfile
✔	8FQD	29384	2024-12-28	2023-01-06	3.01	2.62	3.02	3.0	0.015	0.73	0.0	0.06	17.60	0.00	2.264	6.54	0.11	3.3	96.7	0.0	-0.68	0.64	0.83	1.81	3.0	0.003	0.56	0.0	0.04	16.56	0.00	2.547	6.84	2.01	3.4	96.6	0.0	-0.47	0.32	0.62	0.83	1.44	8384	1064	14	0	4	2	0	logfile
✔	8C54	16433	2024-12-31	2023-01-06	2.52	2.38	2.49	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.003	0.51	0.0	0.04	17.15	0.00	2.551	5.12	2.26	2.1	97.9	0.0	0.98	0.15	0.72	0.84	4.92	14266	1928	12	0	4	330	0	logfile
✔	8FQH	29388	2024-12-28	2023-01-06	3.43	3.05	3.41	3.4	0.015	0.76	0.0	0.06	18.49	0.00	2.135	10.23	0.11	3.0	97.0	0.0	-0.41	0.52	0.74	1.18	3.4	0.003	0.57	0.0	0.04	17.83	0.00	2.351	8.63	4.14	2.9	97.1	0.0	-0.26	1.25	0.53	0.75	0.94	8384	1064	13	0	4	2	0	logfile
✔	8FR0	29394	2024-12-28	2023-01-06	3.04	2.68	2.90	2.9	0.015	0.69	0.0	0.06	17.61	0.00	2.230	7.67	0.00	2.7	97.2	0.1	-0.10	0.62	0.84	1.71	2.9	0.003	0.52	0.0	0.04	16.56	0.00	2.591	6.66	2.35	2.6	97.4	0.0	-0.06	0.89	0.63	0.85	2.07	8392	1064	16	0	4	10	0	logfile
✔	8HYA	35085	2024-12-31	2023-01-06	3.4	3.97	3.56	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	3.9	0.003	0.68	0.0	0.04	16.51	0.00	2.485	12.17	3.00	5.6	94.4	0.0	1.30	0.48	0.58	0.74	0.92	14586	1856	4	0	6	0	0	logfile
✔	8FQE	29385	2024-12-28	2023-01-06	3.14	2.62	3.08	3.0	0.015	0.83	0.0	0.06	18.71	0.00	2.110	11.48	0.22	3.8	96.1	0.1	-1.27	0.58	0.76	1.49	3.0	0.003	0.60	0.0	0.04	18.49	0.00	2.549	9.22	3.02	3.0	97.0	0.0	-0.81	0.32	0.58	0.75	1.37	8386	1064	16	0	4	4	0	logfile
✔	8FQA	29381	2024-12-28	2023-01-05	3.35	2.93	3.36	3.2	0.015	0.74	0.0	0.06	19.08	0.00	2.225	9.52	0.34	3.4	96.6	0.0	0.12	0.61	0.76	1.45	3.2	0.003	0.57	0.0	0.04	18.63	0.00	2.585	7.67	4.03	3.4	96.6	0.0	-0.31	0.43	0.62	0.77	1.40	8386	1064	16	0	4	4	0	logfile
✔	8HXZ	35083	2024-12-30	2023-01-05	3.4	4.97	3.38	2.8	0.005	0.98	0.0	0.05	29.12	0.01	2.303	7.66	0.00	3.0	97.0	0.0	-1.57	0.89	0.77	0.71	2.9	0.004	0.84	0.0	0.04	28.65	0.00	2.343	16.54	1.78	2.9	97.1	0.0	0.17	1.27	0.92	0.86	0.62	13740	879	11	328	0	0	0	logfile
✔	8FQ3	29376	2024-12-28	2023-01-05	3.17	2.87	3.07	3.0	0.015	0.70	0.0	0.06	17.77	0.00	2.185	8.98	0.00	2.7	97.3	0.0	-0.25	0.56	0.74	2.37	3.1	0.004	0.58	0.0	0.04	17.07	0.00	2.403	9.22	4.81	5.0	95.0	0.0	-0.57	0.89	0.57	0.75	2.44	8386	1064	16	0	4	4	0	logfile
✔	8FQ8	29380	2024-12-28	2023-01-05	3.11	2.81	3.14	3.1	0.015	0.74	0.0	0.06	18.29	0.00	2.160	8.39	0.34	3.4	96.6	0.1	-0.44	0.64	0.81	1.73	3.1	0.003	0.59	0.0	0.04	17.41	0.00	2.552	6.96	3.02	2.6	97.3	0.1	0.09	0.36	0.64	0.81	1.50	8392	1064	16	0	4	10	0	logfile
✔	8FPY	29371	2024-12-28	2023-01-05	2.98	2.45	2.88	3.0	0.015	0.70	0.0	0.06	19.34	0.00	2.069	8.15	2.68	1.9	98.1	0.0	-0.27	0.56	0.82	1.41	3.0	0.003	0.58	0.0	0.04	17.97	0.00	2.432	9.58	4.70	2.1	97.9	0.0	-0.26	0.89	0.56	0.83	1.68	8392	1064	16	0	4	10	0	logfile
✔	8FPZ	29372	2024-12-28	2023-01-05	3.01	2.78	2.95	3.0	0.015	0.73	0.0	0.06	17.38	0.00	2.216	7.62	0.11	2.6	97.4	0.0	-0.61	0.59	0.82	2.41	3.0	0.002	0.53	0.0	0.04	16.74	0.00	2.567	6.84	1.79	3.4	96.6	0.0	-0.24	0.89	0.59	0.82	1.95	8392	1064	16	0	4	10	0	logfile
✔	8FPS	29369	2024-12-29	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.45	0.00	2.548	3.22	0.55	0.9	99.1	0.0	4.15	0.26	0.61	0.85	3.68	10602	1338	20	0	4	152	0	logfile
✔	8FQ2	29375	2024-12-28	2023-01-05	3.14	2.91	2.99	3.1	0.015	0.76	0.0	0.06	15.95	0.00	2.031	9.44	0.67	4.7	95.3	0.0	-0.58	0.56	0.71	1.71	3.1	0.003	0.61	0.0	0.04	17.16	0.00	2.144	7.84	1.56	4.8	95.2	0.0	-0.98	1.23	0.59	0.76	1.51	8390	1064	12	0	4	0	0	logfile
✔	8FPV	29370	2024-12-28	2023-01-05	3.08	2.61	3.00	3.0	0.015	0.72	0.0	0.06	17.49	0.00	2.254	6.72	0.22	3.2	96.8	0.0	-0.33	0.60	0.84	2.73	3.0	0.002	0.55	0.0	0.04	17.62	0.00	2.536	6.78	2.68	2.3	97.7	0.0	-0.26	0.89	0.60	0.85	2.55	8394	1064	16	0	4	12	0	logfile
✔	8FQ6	29379	2024-12-28	2023-01-05	3.14	2.92	3.12	3.1	0.015	0.70	0.0	0.06	18.12	0.00	2.275	5.35	0.00	3.5	96.5	0.0	-0.55	0.67	0.85	2.02	3.1	0.002	0.51	0.0	0.04	17.56	0.00	2.605	5.35	2.35	2.5	97.5	0.0	-0.24	0.32	0.66	0.85	2.10	8398	1064	16	0	4	16	0	logfile
✔	8HXX	35081	2024-12-31	2023-01-05	3.0	3.66	3.03	3.3	0.005	0.98	0.0	0.05	16.31	0.01	1.982	9.53	0.18	3.1	96.9	0.0	-1.25	0.78	0.82	2.44	3.4	0.004	0.70	0.0	0.04	17.33	0.00	1.969	9.29	2.09	2.6	97.3	0.1	1.34	1.18	0.78	0.85	2.29	14873	1817	10	0	7	0	0	logfile
✔	8FPH	29364	2024-12-28	2023-01-04	3.14	2.73	3.09	3.2	0.015	0.72	0.0	0.06	17.89	0.00	2.229	7.38	0.11	3.0	97.0	0.0	-0.80	0.64	0.83	2.63	3.1	0.003	0.58	0.0	0.04	17.03	0.00	2.557	6.66	3.13	2.7	97.3	0.0	-0.80	0.38	0.64	0.84	2.89	8388	1064	16	0	4	6	0	logfile
✔	8BV5	16255	2024-12-27	2023-01-04	3.54	2.97	3.43	3.9	0.003	0.66	0.0	0.05	19.37	0.00	1.934	17.97	0.59	5.7	94.3	0.0	-0.26	0.67	0.65	1.40	3.8	0.003	0.67	0.0	0.04	19.17	0.00	1.924	11.55	5.13	5.9	94.0	0.1	-0.10	0.61	0.66	0.66	1.22	6296	767	4	0	3	0	0	logfile

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