Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FPL	29368	2024-12-28	2023-01-04	2.81	2.59	2.78	2.8	0.018	0.79	0.0	0.06	17.84	0.00	2.177	7.23	0.35	1.3	98.7	0.0	0.21	0.69	0.87	4.38	2.8	0.002	0.51	0.0	0.04	17.17	0.00	2.494	5.51	1.97	1.1	98.9	0.0	0.45	0.29	0.69	0.87	3.89	8178	1024	8	0	8	0	0	logfile
✔	8FPG	29363	2024-12-29	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.04	16.23	0.00	2.605	3.94	2.21	3.5	96.5	0.0	4.48	0.29	0.58	0.83	4.00	10674	1348	20	0	4	187	0	logfile
✔	8C4V	16430	2024-12-30	2023-01-04	3.14	3.23	3.09	3.2	0.007	1.01	7.0	0.07	19.43	0.01	1.935	13.76	2.51	4.3	95.7	0.0	-0.71	0.74	0.81	2.54	3.2	0.005	0.63	0.0	0.04	19.38	0.00	1.915	11.70	3.89	3.7	96.3	0.0	0.16	1.14	0.73	0.81	2.56	11731	1308	7	56	1	0	0	logfile
✔	8FPK	29367	2024-12-28	2023-01-04	2.76	2.16	2.74	2.8	0.018	0.76	0.0	0.06	18.10	0.00	2.164	6.20	1.05	2.3	97.7	0.0	-0.24	0.63	0.84	2.89	2.8	0.002	0.50	0.0	0.04	17.44	0.00	2.515	6.63	0.58	1.8	98.2	0.0	-0.19	0.86	0.62	0.84	2.48	8156	1024	8	0	8	0	0	logfile
✔	8FPC	29361	2024-12-28	2023-01-04	2.78	2.77	2.80	2.9	0.015	0.72	0.0	0.06	18.67	0.00	2.235	5.65	2.35	2.2	97.8	0.0	-0.03	0.66	0.87	2.83	2.9	0.002	0.51	0.0	0.04	17.58	0.00	2.619	5.89	2.80	1.6	98.4	0.0	0.32	0.25	0.64	0.86	2.35	8400	1064	16	0	4	18	0	logfile
✔	8HXB	35075	2024-12-31	2023-01-04	2.7	2.94	2.73	3.1	0.007	1.15	6.0	0.07	16.22	0.01	1.970	5.31	1.64	6.9	93.1	0.0	-1.43	0.56	0.69	2.89	3.1	0.004	0.67	0.0	0.05	17.10	0.00	2.572	7.37	4.80	5.9	94.1	0.0	-0.76	0.51	0.66	0.81	3.46	14892	1842	12	0	0	0	0	logfile
✔	8BV5	16255	2024-12-27	2023-01-04	3.54	2.97	3.43	3.9	0.003	0.66	0.0	0.05	19.37	0.00	1.934	17.97	0.59	5.7	94.3	0.0	-0.26	0.67	0.65	1.40	3.8	0.003	0.67	0.0	0.04	19.17	0.00	1.924	11.55	5.13	5.9	94.0	0.1	-0.10	0.61	0.66	0.66	1.22	6296	767	4	0	3	0	0	logfile
✔	8HXA	35074	2024-12-31	2023-01-04	3.04	3.23	3.02	3.2	0.005	1.06	0.0	0.06	15.67	0.01	2.023	5.42	0.18	5.1	94.6	0.3	-0.78	0.68	0.80	2.73	3.2	0.003	0.62	0.0	0.05	16.79	0.00	2.337	8.36	3.71	4.8	94.8	0.3	-0.66	0.42	0.69	0.83	3.57	14790	1842	12	0	0	0	0	logfile
✔	8HWZ	35069	2024-12-30	2023-01-03	3.56	3.98	3.90	4.1	0.003	0.62	0.0	0.04	14.52	0.01	2.103	12.00	0.00	0.9	99.1	0.0	4.47	0.78	0.84	1.82	4.1	0.003	0.57	0.0	0.03	17.04	0.00	2.492	9.00	3.58	1.9	98.1	0.0	4.17	1.03	0.76	0.84	1.78	13625	1751	12	0	0	0	0	logfile
✔	8HX1	35071	2024-12-31	2023-01-03	3.29	3.53	3.34	3.5	0.005	0.63	0.0	0.04	13.93	0.00	2.182	3.33	0.00	1.2	98.8	0.0	3.33	0.75	0.83	2.28	3.5	0.006	0.58	0.0	0.04	15.82	0.00	2.506	2.72	1.76	2.3	97.7	0.0	2.73	0.26	0.69	0.83	1.81	14919	1926	12	0	0	0	0	logfile
✔	8C4C	16424	2024-12-29	2023-01-03	2.7	1.97	2.55	2.5	0.004	0.59	0.0	0.04	15.85	0.00	1.875	3.52	0.89	2.3	97.6	0.1	1.30	0.63	0.80	4.55	2.3	0.004	0.65	0.0	0.04	17.01	0.00	1.764	3.70	1.92	3.0	96.9	0.1	0.75	0.96	0.69	0.83	4.32	56164	3584	20	0	24	0	27864	logfile
✔	8C4E	16425	2024-12-29	2023-01-03	2.6	2.28	2.42	2.4	0.005	0.66	0.0	0.04	16.88	0.00	1.847	4.09	1.13	2.5	97.4	0.1	0.56	0.71	0.86	5.33	2.4	0.004	0.64	0.0	0.04	17.24	0.00	1.780	3.56	2.01	2.8	97.1	0.1	0.78	0.88	0.71	0.86	4.91	57172	3648	20	0	24	0	28376	logfile
✔	8HX0	35070	2024-12-31	2023-01-03	2.9	3.26	3.11	3.2	0.003	0.55	0.0	0.04	13.32	0.00	2.234	5.10	0.06	0.5	99.5	0.0	3.64	0.69	0.85	3.53	3.2	0.005	0.55	0.0	0.04	15.07	0.00	2.516	2.55	1.19	1.3	98.7	0.0	3.13	0.78	0.67	0.86	3.18	14919	1926	12	0	0	0	0	logfile
✔	8HWT	35064	2024-12-30	2023-01-02	2.91	2.42	2.95	2.1	0.003	0.56	0.0	0.04	12.84	0.00	2.241	6.29	0.22	4.0	96.0	0.0	0.29	0.72	0.74	3.81	2.1	0.003	0.59	0.0	0.04	15.10	0.01	2.594	5.34	1.98	4.6	95.4	0.0	0.43	0.33	0.78	0.81	3.61	8077	1058	5	0	0	0	0	logfile
✔	8C44	16416	2024-12-27	2022-12-31	3.2	3.59	3.22	3.5	0.020	1.66	0.0	0.10	12.79	0.02	2.336	10.29	0.54	3.1	96.9	0.0	1.28	0.67	0.71	2.67	3.5	0.004	0.65	0.0	0.04	16.34	0.00	2.457	10.68	1.79	2.2	97.8	0.0	1.41	1.55	0.64	0.74	2.45	5239	623	3	0	2	0	0	logfile
✔	8HWC	35053	2024-12-31	2022-12-29	3.3	3.53	3.33	3.5	0.003	0.60	0.0	0.04	16.49	0.00	2.245	10.08	0.30	6.5	93.5	0.0	-1.80	0.69	0.76	2.11	3.5	0.003	0.63	0.0	0.04	16.91	0.00	2.532	6.09	2.13	6.1	93.9	0.0	-1.56	1.20	0.71	0.82	2.11	14943	1836	6	0	0	0	0	logfile
✔	8HWD	35054	2024-12-31	2022-12-29	3.3	3.51	3.30	3.5	0.004	0.73	0.0	0.04	18.03	0.00	2.199	14.55	1.25	8.6	91.3	0.1	-1.70	0.67	0.73	1.46	3.5	0.003	0.71	0.0	0.04	18.20	0.00	2.319	9.53	3.93	7.6	92.4	0.0	-1.31	0.43	0.67	0.75	1.43	15029	1834	12	0	6	0	0	logfile
✔	8C3Y	16415	2024-12-28	2022-12-29	3.8	4.37	3.84	4.1	0.018	1.56	0.0	0.10	10.95	0.01	2.226	7.90	0.48	3.7	96.0	0.3	0.34	0.79	0.76	0.80	4.1	0.004	0.79	0.0	0.04	16.09	0.01	2.437	14.99	2.42	5.0	94.7	0.3	0.74	2.75	0.78	0.77	1.09	7580	929	1	0	0	0	0	logfile
✔	8FNU	29326	2024-12-26	2022-12-28	2.5	2.64	2.51	2.6	0.006	1.29	0.0	0.06	17.42	0.02	1.867	12.22	4.47	9.1	90.0	0.9	-0.70	0.62	0.75	2.44	2.6	0.003	0.65	0.0	0.04	17.95	0.00	2.443	8.21	2.86	7.7	91.5	0.8	0.39	1.26	0.68	0.83	2.54	46214	5572	7	0	0	0	0	logfile
✔	8HW2	35049	2024-12-29	2022-12-28	3.65	4.12	3.84	4.0	0.008	0.85	0.0	0.05	15.68	0.01	2.154	14.21	0.09	7.2	92.8	0.0	-2.33	0.69	0.80	1.01	4.0	0.006	1.06	0.0	0.05	16.66	0.00	2.114	13.62	2.55	8.0	91.9	0.1	-1.71	1.13	0.68	0.80	1.07	10853	1375	2	0	2	0	0	logfile

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