Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FNT	29323	2024-12-26	2022-12-28	2.52	2.49	2.40	2.6	0.010	1.80	0.0	0.11	19.93	0.03	1.042	23.04	10.57	9.0	89.8	1.3	-2.16	0.63	0.74	1.87	2.6	0.003	0.63	0.0	0.04	18.60	0.00	2.069	7.83	2.34	5.8	94.1	0.2	0.63	1.17	0.70	0.85	2.94	43868	5490	7	0	0	0	0	logfile
✔	8HVT	35048	2024-12-29	2022-12-27	3.6	3.70	3.55	3.6	0.009	1.11	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.6	0.002	0.66	0.0	0.04	15.87	0.00	2.027	7.60	0.96	4.2	95.8	0.0	2.05	0.39	0.59	0.86	2.06	10702	1366	8	0	12	0	0	logfile
✔	8FMX	29299	2024-12-29	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.57	0.0	0.04	14.14	0.00	2.512	3.70	0.35	2.6	97.4	0.0	0.98	1.23	0.88	0.87	2.29	10329	1335	9	0	12	0	0	logfile
✔	8FMZ	29301	2024-12-28	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.003	0.58	0.0	0.04	14.27	0.00	2.545	4.03	1.81	2.1	97.9	0.0	1.55	1.08	0.67	0.86	3.89	8768	1126	6	0	0	0	0	logfile
✔	8FMY	29300	2024-12-29	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.034	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.003	0.59	0.0	0.04	14.13	0.00	2.646	1.24	0.46	3.4	96.6	0.0	0.97	1.10	0.83	0.83	3.58	9597	1260	3	0	0	0	0	logfile
✔	8HVi	35044	2024-12-28	2022-12-26	3.04	4.28	3.02	3.2	0.005	0.92	0.0	0.05	15.48	0.01	2.255	9.87	0.62	3.8	96.1	0.1	-1.79	0.79	0.80	4.09	3.2	0.002	0.55	0.0	0.04	15.62	0.00	2.493	7.34	1.95	2.9	97.1	0.0	0.05	0.29	0.88	0.92	3.92	8988	1148	6	0	1	0	0	logfile
✔	8FN0	29302	2024-12-28	2022-12-26	2.89	2.19	2.89	2.1	0.005	0.95	0.0	0.16	11.79	0.01	2.225	6.24	0.11	1.9	98.1	0.0	1.16	0.78	0.80	3.85	2.0	0.004	0.64	0.0	0.04	15.42	0.00	2.484	5.40	1.93	2.2	97.8	0.0	1.55	0.52	0.78	0.80	3.02	8502	1120	7	0	1	0	0	logfile
✔	8FN1	29303	2024-12-28	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.56	0.0	0.04	13.34	0.00	2.505	5.92	2.04	2.8	97.2	0.0	1.59	0.47	0.78	0.80	3.63	8444	1116	6	0	0	0	0	logfile
✔	8HUJ	35041	2024-12-28	2022-12-24	3.76	2.84	3.69	2.7	0.005	0.83	0.0	0.06	22.48	0.00	2.203	13.57	2.51	3.2	96.8	0.0	-0.39	0.74	0.78	1.43	2.7	0.005	0.67	0.0	0.04	21.98	0.00	2.475	11.85	5.21	3.2	96.8	0.0	0.32	0.48	0.74	0.79	0.98	7143	621	4	99	3	1	0	logfile
✘	8HUD	35035	2024-12-29	2022-12-23	3.43	3.64	3.43	3.6	0.005	0.84	0.0	0.06	20.89	0.00	2.284	10.27	0.56	9.8	90.2	0.0	-1.38	0.71	0.70	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8670	767	4	108	0	0	0	logfile
✔	8C2H	16390	2024-12-29	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	17.61	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.003	0.53	0.0	0.04	15.44	0.00	2.521	3.50	2.68	0.8	99.2	0.0	3.71	0.51	0.64	0.88	4.31	10071	1238	24	0	12	86	0	logfile
✔	8FLU	29287	2024-12-28	2022-12-22	2.76	3.00	2.82	3.1	0.004	0.70	0.0	0.05	13.28	0.00	2.223	12.74	0.35	3.0	96.9	0.1	0.56	0.64	0.74	3.48	3.1	0.005	0.66	0.0	0.04	15.93	0.00	2.516	10.91	2.20	3.0	97.0	0.0	0.97	0.98	0.64	0.78	2.89	8725	1141	9	0	0	5	0	logfile
✔	8FLS	29285	2024-12-28	2022-12-22	3.09	3.25	3.02	3.3	0.004	0.70	1.0	0.05	14.01	0.00	2.239	7.40	1.11	2.5	97.5	0.0	1.08	0.62	0.69	2.57	3.3	0.003	0.53	0.0	0.04	15.35	0.00	2.571	5.44	1.33	2.6	97.4	0.0	1.51	0.29	0.61	0.77	2.23	8844	1144	6	0	0	0	0	logfile
✔	8FLQ	29283	2024-12-28	2022-12-22	2.55	2.78	2.65	2.8	0.003	0.57	0.0	0.04	13.87	0.00	2.209	7.54	0.21	2.1	97.9	0.0	1.35	0.64	0.70	3.93	2.9	0.005	0.61	0.0	0.04	15.98	0.00	2.542	7.31	0.64	2.8	97.2	0.0	1.36	0.33	0.64	0.83	3.35	8992	1146	9	0	0	14	0	logfile
✔	8FLR	29284	2024-12-28	2022-12-22	2.94	3.07	2.85	3.2	0.003	0.59	0.0	0.04	13.80	0.00	2.201	7.84	0.11	3.0	97.0	0.0	1.23	0.65	0.73	4.03	3.2	0.003	0.55	0.0	0.04	15.62	0.00	2.493	5.55	1.74	2.5	97.5	0.0	1.86	0.94	0.65	0.82	3.26	8928	1147	9	0	0	10	0	logfile
✔	8FLT	29286	2024-12-28	2022-12-22	3.03	3.20	2.98	3.3	0.004	0.67	0.0	0.04	13.48	0.00	2.194	7.65	0.12	2.4	97.6	0.0	0.67	0.67	0.75	3.93	3.3	0.004	0.59	0.0	0.04	15.11	0.00	2.388	7.02	1.77	2.8	97.2	0.0	1.03	0.93	0.64	0.81	3.02	8086	1031	6	0	0	0	0	logfile
✔	8FLJ	29280	2024-12-29	2022-12-21	3.48	4.04	3.47	3.9	0.005	0.84	3.0	0.06	22.12	0.01	2.077	5.11	0.21	4.3	95.7	0.0	-0.29	0.77	0.71	1.07	3.8	0.004	0.61	0.0	0.04	22.27	0.00	2.350	5.14	2.12	3.3	96.7	0.1	1.26	0.84	0.80	0.78	2.14	57091	3549	14	350	0	0	25297	logfile
✔	8C20	16386	2024-12-30	2022-12-21	3.5	4.44	3.33	3.9	0.004	0.63	1.0	0.04	15.26	0.00	2.203	6.69	0.53	4.6	95.1	0.3	0.53	0.64	0.67	1.71	4.0	0.002	0.56	0.0	0.04	16.04	0.00	2.340	50.48	3.42	3.5	96.5	0.0	1.73	2.51	0.66	0.80	1.94	11908	1408	6	0	2	0	207	logfile
✔	8C1Z	16385	2024-12-30	2022-12-21	3.8	4.18	3.40	3.8	0.003	0.55	0.0	0.04	15.09	0.00	1.892	7.89	0.22	5.0	94.6	0.4	-0.33	0.67	0.69	2.16	3.8	0.003	0.65	0.0	0.04	15.80	0.00	2.460	7.85	1.79	4.7	95.1	0.1	0.88	1.96	0.71	0.84	2.27	11863	1433	4	0	0	0	0	logfile
✘	8HTT	35017	2024-12-27	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile

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