Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8HTT	35017	2024-12-27	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile
✘	8C21	16387	2024-12-30	2022-12-21	3.6	4.19	3.27	3.8	0.003	0.58	0.0	0.04	14.61	0.00	2.223	10.61	0.07	5.2	94.4	0.4	0.00	0.65	0.67	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11954	1441	6	0	2	0	0	logfile
✔	8C20	16386	2024-12-30	2022-12-21	3.5	4.44	3.33	3.9	0.004	0.63	1.0	0.04	15.26	0.00	2.203	6.69	0.53	4.6	95.1	0.3	0.53	0.64	0.67	1.71	4.0	0.002	0.56	0.0	0.04	16.04	0.00	2.340	50.48	3.42	3.5	96.5	0.0	1.73	2.51	0.66	0.80	1.94	11908	1408	6	0	2	0	207	logfile
✔	8HSR	35004	2024-12-26	2022-12-20	4.0	4.38	—	3.1	0.005	0.80	0.0	0.05	15.15	0.01	1.243	24.74	0.02	6.7	93.1	0.2	-0.72	0.73	0.54	—	3.0	0.004	0.75	0.0	0.04	16.84	0.01	1.944	16.14	1.70	6.1	93.9	0.1	-0.55	0.54	0.88	0.81	—	42577	5143	21	95	21	0	0	logfile
✔	8C1B	16377	2024-12-30	2022-12-20	3.8	4.32	3.79	3.9	0.007	1.31	2.0	0.07	16.55	0.01	2.045	3.20	0.28	4.2	95.5	0.2	-0.06	0.76	0.70	0.87	3.9	0.004	0.64	0.0	0.04	14.12	0.00	2.327	8.12	0.97	4.9	95.1	0.0	0.58	0.59	0.78	0.73	1.23	12675	807	7	0	16	0	6106	logfile
✔	8FK0	29247	2024-12-30	2022-12-20	4.0	4.01	3.66	3.9	0.003	0.56	0.0	0.04	11.08	0.00	2.069	9.71	0.14	2.6	97.4	0.0	0.90	0.47	0.82	—	3.9	0.003	0.81	1.0	0.04	13.40	0.00	2.307	7.57	2.08	2.8	97.2	0.0	1.13	1.16	0.47	0.82	—	12628	1848	14	0	0	0	0	logfile
✔	8FJB	29221	2024-12-27	2022-12-19	3.06	3.49	3.03	3.4	0.006	0.68	0.0	0.05	13.23	0.01	2.135	3.71	0.00	2.7	97.2	0.1	-1.47	0.70	0.89	5.11	3.4	0.004	0.58	0.0	0.04	14.71	0.00	2.523	2.42	0.58	2.5	97.5	0.0	1.10	0.91	0.74	0.92	4.44	6330	802	5	0	0	0	0	logfile
✔	8C0V	16372	2024-12-26	2022-12-19	4.1	3.82	4.15	3.8	0.003	0.75	0.0	0.05	14.63	0.01	1.947	6.37	0.06	7.3	92.7	0.0	-2.19	0.82	0.76	—	3.4	0.004	0.73	0.0	0.05	14.38	0.00	1.806	10.21	0.00	6.8	93.2	0.0	-0.89	1.01	0.83	0.79	—	43092	5555	13	0	31	0	0	logfile
✔	8HSC	34993	2024-12-29	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.004	0.62	0.0	0.04	18.35	0.00	2.499	9.38	4.39	5.8	94.2	0.0	-0.68	0.32	0.63	0.82	1.89	10180	1345	7	0	0	0	0	logfile
✔	8FJA	29220	2024-12-27	2022-12-19	3.0	3.44	2.98	3.3	0.007	0.82	0.0	0.05	12.62	0.01	2.220	6.93	0.00	5.8	94.2	0.0	-2.60	0.71	0.89	4.79	3.3	0.003	0.57	0.0	0.04	15.57	0.00	2.527	3.59	1.00	3.0	97.0	0.0	-0.13	0.94	0.71	0.90	4.30	6419	812	5	0	0	0	0	logfile
✔	8HSi	34998	2024-12-27	2022-12-19	3.1	3.78	3.14	3.6	0.005	0.85	1.0	0.05	19.62	0.00	2.299	14.97	0.00	5.5	94.5	0.0	0.27	0.64	0.80	2.26	3.6	0.003	0.59	0.0	0.04	14.33	0.00	2.536	5.46	2.23	6.5	93.5	0.0	1.56	0.43	0.65	0.84	1.87	3516	405	5	0	10	0	0	logfile
✔	8C0W	16373	2024-12-26	2022-12-19	4.7	4.86	4.66	4.7	0.004	0.89	0.0	0.05	14.89	0.01	1.748	6.29	0.00	9.8	90.2	0.0	-2.63	0.86	0.75	—	4.7	0.003	0.75	0.0	0.04	14.63	0.00	1.875	10.66	0.02	7.5	92.5	0.0	-1.14	1.26	0.88	0.79	—	43092	5555	13	0	31	0	0	logfile
✔	8HSB	34992	2024-12-27	2022-12-18	3.0	3.16	3.05	3.2	0.003	0.71	0.0	0.04	12.90	0.01	2.156	10.62	0.00	3.8	95.8	0.4	0.19	0.55	0.57	1.28	3.2	0.003	0.65	0.0	0.04	15.96	0.01	2.551	8.85	2.19	4.6	95.2	0.2	0.54	0.53	0.55	0.60	0.50	4278	533	2	0	0	0	0	logfile
✔	8HRY	34982	2024-12-27	2022-12-16	3.11	3.51	3.06	3.4	0.003	0.66	0.0	0.04	15.76	0.01	2.228	9.30	0.74	4.9	95.1	0.0	0.28	0.54	0.84	2.28	3.4	0.003	0.67	0.0	0.04	16.15	0.00	2.421	7.31	4.15	4.4	95.6	0.0	0.32	0.25	0.54	0.83	2.24	6016	782	4	0	0	0	0	logfile
✔	8HS3	34984	2024-12-28	2022-12-16	3.14	3.64	3.25	3.6	0.005	0.75	0.0	0.05	16.98	0.01	2.141	7.14	0.36	5.6	94.4	0.0	-1.38	0.55	0.78	2.00	3.6	0.003	0.57	0.0	0.04	17.24	0.00	2.156	7.08	4.99	4.3	95.7	0.0	-0.33	0.32	0.53	0.76	2.04	8258	1124	5	0	0	0	0	logfile
✔	8HRX	34981	2024-12-27	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.70	0.0	0.04	16.92	0.00	2.465	7.74	3.23	6.9	93.1	0.0	-0.16	0.32	0.59	0.86	2.63	6013	780	4	0	0	0	0	logfile
✔	8C07	16356	2024-12-27	2022-12-16	3.3	2.75	3.20	2.2	0.004	0.94	0.0	0.05	16.63	0.01	2.288	4.36	0.38	8.1	91.9	0.0	-3.00	0.77	0.72	1.96	3.2	0.005	0.84	0.0	0.04	17.44	0.01	2.074	9.34	2.45	7.6	92.4	0.0	-1.08	0.93	0.78	0.74	1.90	4974	644	5	0	1	0	0	logfile
✔	8HS2	34983	2024-12-27	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.004	0.67	0.0	0.04	15.29	0.00	2.468	9.45	2.15	5.5	94.5	0.0	0.84	0.33	0.67	0.87	2.63	5456	716	3	0	0	0	0	logfile
✔	8HRU	34980	2024-12-27	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.0	0.003	0.82	0.0	0.05	17.69	0.00	2.520	15.24	3.23	4.2	95.8	0.0	-0.34	0.69	0.75	0.69	0.45	4870	597	1	0	0	0	0	logfile
✔	8C03	16354	2024-12-27	2022-12-15	3.89	4.09	3.71	4.1	0.006	0.67	0.0	0.04	13.12	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.72	0.0	0.04	16.34	0.00	2.561	14.37	4.46	1.4	98.6	0.0	2.69	1.49	0.56	0.78	1.33	3330	429	2	0	1	0	0	logfile

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