Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FEH	29027	2024-12-27	2022-12-06	3.28	4.31	3.36	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.003	0.64	0.0	0.04	15.12	0.00	2.545	9.73	1.38	4.5	95.5	0.0	-1.57	2.58	0.47	0.88	2.31	1993	268	1	0	0	0	0	logfile
✔	8BVR	16269	2024-12-27	2022-12-05	3.52	4.00	3.61	3.9	0.005	0.72	0.0	0.04	17.01	0.01	2.178	12.22	0.19	4.6	95.4	0.0	0.64	0.62	0.78	1.14	3.9	0.003	0.69	0.0	0.04	17.21	0.00	2.520	10.97	6.02	3.9	96.1	0.0	1.17	0.30	0.59	0.78	1.18	4806	617	3	0	3	0	0	logfile
✔	8HMV	34903	2024-12-28	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.51	0.0	0.04	15.55	0.00	2.548	3.28	1.35	2.4	97.6	0.0	0.81	0.38	0.65	0.87	3.55	8127	1022	5	0	0	0	0	logfile
✔	8FE1	29019	2024-12-31	2022-12-05	3.0	3.54	2.92	3.3	0.016	1.03	0.0	0.09	17.02	0.01	2.217	4.85	0.06	1.4	98.6	0.0	0.44	0.73	0.85	3.73	3.3	0.003	0.65	0.0	0.04	14.44	0.00	2.489	5.78	1.82	1.4	98.6	0.0	1.38	1.27	0.73	0.87	3.65	15445	1772	12	0	48	0	0	logfile
✔	8HMP	34902	2024-12-28	2022-12-05	2.77	2.61	2.82	2.8	0.005	0.92	0.0	0.06	14.08	0.01	2.228	5.94	0.00	3.4	96.6	0.0	-0.73	0.63	0.79	3.64	2.7	0.003	0.69	0.0	0.04	16.83	0.00	2.424	8.92	2.76	4.0	96.0	0.0	0.41	0.43	0.62	0.82	3.42	8319	1045	6	0	1	0	0	logfile
✘	8BVS	16270	2024-12-27	2022-12-05	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4799	617	4	1	1	0	0	logfile
✔	8FDU	29014	2024-12-30	2022-12-04	3.3	3.75	3.30	3.6	0.005	0.83	0.0	0.05	13.46	0.00	2.212	12.19	0.21	4.1	95.9	0.1	-0.29	0.66	0.78	1.76	3.6	0.005	0.69	0.0	0.05	15.56	0.00	2.462	9.24	1.98	4.2	95.8	0.0	0.31	1.22	0.67	0.80	1.83	13193	1633	4	0	2	0	0	logfile
✔	8FDG	29011	2024-12-30	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	8HM0	34887	2024-12-29	2022-12-02	3.1	3.43	3.01	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.003	0.66	0.0	0.04	17.05	0.00	2.516	8.39	5.39	6.8	93.2	0.0	-1.49	0.46	0.76	0.81	2.12	11331	1474	3	0	0	0	0	logfile
✔	8FCX	28998	2024-12-30	2022-12-01	3.04	4.27	3.25	3.6	0.003	0.60	0.0	0.04	17.79	0.00	1.984	13.10	0.61	3.9	95.4	0.7	0.34	0.85	0.79	0.79	3.6	0.003	0.62	0.0	0.04	17.62	0.00	1.838	10.41	1.28	3.6	96.1	0.4	1.52	2.52	0.87	0.83	0.99	13940	1715	10	0	10	0	0	logfile
✔	8FCW	28997	2024-12-31	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.67	0.0	0.04	19.94	0.00	1.871	9.94	2.03	2.6	97.0	0.4	1.28	1.33	0.87	0.85	1.70	15170	1715	12	60	10	0	0	logfile
✔	8BUZ	16252	2024-12-29	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.4	0.003	0.61	0.0	0.04	17.64	0.00	1.953	10.02	3.33	4.9	95.1	0.0	0.98	1.41	0.73	0.77	1.17	9921	1223	4	0	3	0	0	logfile
✘	8FC9	28977	2024-12-26	2022-12-01	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41172	3092	12	4	4	0	19360	logfile
✔	8FAZ	28961	2024-12-28	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.0	0.004	0.71	0.0	0.04	15.43	0.00	1.946	12.27	1.87	2.9	97.1	0.0	0.43	2.04	0.83	0.82	2.63	7331	926	7	0	5	0	0	logfile
✘	8HLB	34871	2024-12-28	2022-11-29	3.63	3.93	3.68	4.0	0.003	0.65	1.0	0.04	13.64	0.01	2.204	10.49	0.00	8.4	91.2	0.4	-2.13	0.70	0.75	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7461	977	5	0	0	0	0	logfile
✔	8FAK	28959	2024-12-31	2022-11-28	3.22	3.32	3.44	3.4	0.002	0.46	0.0	0.04	19.10	0.00	1.988	8.55	0.00	2.3	97.7	0.0	1.43	0.69	0.74	2.43	3.4	0.004	0.57	0.0	0.04	20.04	0.00	2.270	4.08	0.99	5.8	94.2	0.0	-0.18	1.26	0.70	0.78	2.60	14963	837	7	57	2	0	7248	logfile
✘	8HKX	34862	2024-12-30	2022-11-28	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.91	—	—	1.03	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.66	—	—	—	0.58	59656	3419	28	1491	57	0	0	logfile
✔	8FAi	28957	2024-12-28	2022-11-27	3.0	2.58	3.05	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.004	0.64	0.0	0.04	15.87	0.00	2.225	5.64	6.67	0.1	99.9	0.0	3.84	2.69	0.54	0.83	1.88	7845	1020	25	0	15	0	0	logfile
✔	8HK7	34848	2024-12-31	2022-11-25	3.0	3.70	3.51	3.9	0.009	0.75	0.0	0.04	16.92	0.00	1.579	11.81	0.53	8.6	91.2	0.2	-0.87	0.43	0.39	0.28	3.6	0.004	0.90	0.0	0.05	19.54	0.00	2.296	10.18	2.12	7.8	92.2	0.0	-0.85	2.07	0.60	0.78	1.63	15765	1872	8	0	17	0	0	logfile
✔	8FA2	28948	2024-12-27	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.03	14.36	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.77	0.33	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile

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