Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FA1	28947	2024-12-27	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.51	0.0	0.04	16.11	0.00	2.407	7.17	1.35	0.6	99.4	0.0	4.97	1.17	0.77	0.79	1.42	2553	339	6	0	0	0	0	logfile
✔	8FA2	28948	2024-12-27	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.03	14.36	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.77	0.33	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile
✔	8HK2	34842	2024-12-29	2022-11-24	2.9	2.57	2.94	3.1	0.007	1.06	2.0	0.08	9.70	0.01	2.114	6.33	0.79	2.5	97.1	0.3	0.47	0.78	0.81	3.37	3.2	0.003	0.64	0.0	0.04	14.63	0.00	2.532	7.75	1.88	2.3	97.7	0.0	1.03	2.55	0.78	0.85	3.24	9548	1212	7	0	7	0	0	logfile
✔	8HK5	34846	2024-12-28	2022-11-24	3.0	2.26	2.92	2.1	0.003	0.50	0.0	0.04	11.85	0.00	2.073	2.69	0.24	0.8	99.2	0.0	-0.35	0.74	0.74	2.80	2.0	0.004	0.64	0.0	0.04	15.62	0.00	2.461	7.80	2.56	1.7	98.3	0.0	1.00	0.54	0.77	0.80	3.10	7604	967	6	0	2	0	0	logfile
✔	8HK3	34843	2024-12-28	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.2	0.003	0.59	0.0	0.04	13.55	0.00	2.528	4.55	2.24	3.1	96.9	0.0	1.06	1.20	0.77	0.79	2.95	8746	1135	5	0	0	0	0	logfile
✔	8BRD	16212	2024-12-29	2022-11-23	2.48	2.70	2.49	2.8	0.005	0.83	2.0	0.06	16.18	0.02	1.733	13.70	2.88	2.4	97.6	0.0	2.09	0.57	0.78	2.12	2.8	0.003	0.57	0.0	0.04	17.06	0.00	2.136	8.53	2.78	2.2	97.8	0.0	2.87	0.96	0.61	0.81	1.99	9929	1312	13	0	2	12	0	logfile
✔	8BRJ	16217	2024-12-31	2022-11-23	4.08	4.17	4.08	4.0	0.003	0.64	0.0	0.04	13.33	0.00	2.086	18.92	0.17	6.9	92.7	0.4	-0.95	0.72	0.46	—	4.0	0.004	0.85	0.0	0.05	13.68	0.01	2.383	15.92	0.09	7.4	92.2	0.4	-1.31	1.82	0.85	0.79	—	11627	1582	3	0	0	0	0	logfile
✔	8BRi	16215	2024-12-29	2022-11-23	3.9	4.18	3.97	4.1	0.005	1.30	2.0	0.07	16.37	0.01	1.969	24.91	1.15	2.8	97.2	0.0	2.08	0.70	0.79	1.45	4.1	0.004	0.97	0.0	0.05	17.45	0.00	2.446	17.47	4.13	2.2	97.8	0.0	1.07	0.55	0.71	0.80	0.83	9911	1312	7	0	0	0	0	logfile
✔	8F9G	28942	2024-12-31	2022-11-23	3.2	3.47	3.28	3.6	0.006	1.04	0.0	0.07	12.57	0.01	2.197	0.76	0.14	1.7	98.3	0.0	1.14	0.62	0.74	3.18	3.5	0.005	0.91	2.0	0.05	13.33	0.00	2.041	6.49	1.71	2.7	97.2	0.1	0.47	1.34	0.67	0.82	3.06	15154	1648	27	0	299	0	0	logfile
✔	8F8P	28932	2024-12-31	2022-11-22	2.26	2.19	2.27	1.9	0.004	0.83	0.0	0.05	17.73	0.01	2.301	2.96	2.04	2.7	97.3	0.0	-1.31	0.72	0.85	2.89	1.8	0.004	0.84	1.0	0.05	17.00	0.00	2.005	5.16	2.36	3.0	97.0	0.0	0.83	1.16	0.73	0.87	3.30	14640	1855	10	0	10	0	0	logfile
✔	8HiZ	34830	2024-12-27	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	16.64	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.004	0.64	0.0	0.04	16.35	0.00	2.384	11.25	1.21	3.4	96.6	0.0	0.85	1.45	0.40	0.79	2.44	3274	416	2	0	1	0	0	logfile
✔	8HJ9	34835	2024-12-27	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	16.74	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	3.2	0.002	0.51	0.0	0.04	16.20	0.00	2.540	8.94	1.21	3.4	96.6	0.0	1.88	2.00	0.43	0.78	2.62	3274	416	2	0	1	0	0	logfile
✔	8HJ4	34832	2024-12-30	2022-11-22	3.1	3.53	3.17	3.4	0.003	0.60	0.0	0.04	18.93	0.00	2.211	12.99	0.73	6.9	92.9	0.3	-1.12	0.78	0.73	2.10	3.4	0.003	0.62	0.0	0.04	19.59	0.00	2.482	9.90	2.08	5.9	94.0	0.1	-0.53	0.46	0.79	0.77	1.78	11652	1163	3	113	0	0	0	logfile
✔	8HJ0	33482	2024-12-28	2022-11-22	3.12	2.73	3.10	2.8	0.006	1.07	0.0	0.06	14.89	0.01	2.254	6.47	0.00	4.6	95.4	0.0	-1.89	0.52	0.66	2.34	2.8	0.003	0.64	0.0	0.04	16.83	0.00	2.509	9.83	3.88	4.5	95.5	0.0	0.01	0.44	0.52	0.68	1.60	8260	1043	5	0	0	0	0	logfile
✔	8HJ2	33481	2024-12-28	2022-11-22	3.8	3.53	3.77	3.5	0.007	1.20	0.0	0.07	13.41	0.01	2.242	5.80	0.00	4.9	95.1	0.0	-2.19	0.59	0.75	1.57	3.5	0.003	0.67	0.0	0.04	15.96	0.00	2.515	9.20	3.48	3.8	96.2	0.0	0.71	0.52	0.58	0.74	0.94	7467	1027	5	0	0	0	0	logfile
✔	8HiX	33480	2024-12-28	2022-11-22	3.12	2.87	3.08	3.0	0.006	0.94	0.0	0.06	15.23	0.01	2.178	6.64	0.00	4.1	95.9	0.0	-1.52	0.55	0.70	2.46	3.0	0.003	0.59	0.0	0.04	17.12	0.00	2.432	9.32	2.32	3.3	96.7	0.0	0.47	0.36	0.54	0.72	1.74	8274	1043	5	0	0	0	0	logfile
✔	8BR2	16197	2024-12-31	2022-11-22	2.9	2.85	2.83	2.9	0.008	0.56	0.0	0.04	18.03	0.02	2.117	11.68	0.80	3.0	97.0	0.0	-2.85	0.62	0.85	3.35	2.9	0.005	0.85	1.0	0.05	19.19	0.00	2.024	5.76	1.99	1.6	98.4	0.0	0.27	1.49	0.59	0.87	3.05	15574	1866	21	40	18	120	0	logfile
✔	8HJ5	34833	2024-12-29	2022-11-22	3.0	3.45	3.17	3.4	0.004	0.69	0.0	0.04	14.85	0.00	2.244	8.22	0.19	5.4	94.6	0.0	-0.98	0.54	0.81	3.03	3.4	0.003	0.63	0.0	0.04	15.64	0.00	2.434	4.68	2.26	4.6	95.4	0.0	-0.12	0.29	0.56	0.82	2.68	9678	1232	7	0	1	0	0	logfile
✔	8HJ3	34831	2024-12-27	2022-11-22	3.29	3.43	3.19	3.3	0.005	0.80	0.0	0.05	14.80	0.01	2.200	16.79	0.30	3.6	96.4	0.0	1.21	0.46	0.76	2.55	3.3	0.004	0.74	0.0	0.05	15.69	0.00	2.494	14.94	2.12	3.6	96.4	0.0	0.87	1.46	0.46	0.78	2.22	3274	416	2	0	1	0	0	logfile
✔	8F86	28915	2024-12-30	2022-11-21	3.1	3.36	3.26	1.8	0.004	0.66	0.0	0.06	26.37	0.00	1.927	8.46	0.00	5.2	94.6	0.2	0.66	0.85	0.80	1.06	2.1	0.005	0.66	0.0	0.05	26.90	0.01	2.312	8.76	3.21	4.0	95.8	0.2	1.18	0.40	0.86	0.81	1.18	14400	1055	13	296	2	0	0	logfile

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