Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HiN	34823	2024-12-27	2022-11-21	3.3	2.71	3.35	3.3	0.017	2.46	6.0	0.10	16.88	0.01	2.228	12.04	4.58	6.7	92.6	0.7	-3.91	0.50	0.70	2.78	3.3	0.003	0.65	0.0	0.04	16.96	0.00	2.575	7.47	2.99	3.0	97.0	0.0	1.67	0.51	0.64	0.78	1.54	4788	617	3	0	2	0	0	logfile
✔	8F86	28915	2024-12-30	2022-11-21	3.1	3.36	3.26	1.8	0.004	0.66	0.0	0.06	26.37	0.00	1.927	8.46	0.00	5.2	94.6	0.2	0.66	0.85	0.80	1.06	2.1	0.005	0.66	0.0	0.05	26.90	0.01	2.312	8.76	3.21	4.0	95.8	0.2	1.18	0.40	0.86	0.81	1.18	14400	1055	13	296	2	0	0	logfile
✔	8Hio	34824	2024-12-27	2022-11-21	3.73	4.15	3.86	4.0	0.005	0.66	0.0	0.04	18.51	0.00	1.744	10.33	0.00	2.8	97.2	0.0	2.22	0.74	0.74	0.93	4.0	0.004	0.71	0.0	0.04	19.64	0.00	1.923	12.52	2.58	1.6	98.4	0.0	1.89	1.70	0.76	0.75	0.72	6681	719	5	47	2	0	0	logfile
✔	8HiQ	34826	2024-12-27	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	17.06	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.004	0.61	0.0	0.04	16.79	0.01	2.400	10.94	1.21	4.3	95.7	0.0	1.49	1.06	0.43	0.78	2.14	3274	416	2	0	1	0	0	logfile
✔	8F7X	28912	2024-12-28	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.4	0.004	0.91	1.0	0.04	14.70	0.00	2.240	8.05	2.78	2.1	97.9	0.0	1.41	1.11	0.63	0.85	2.20	8902	1145	6	0	0	0	0	logfile
✘	8HiJ	34818	2024-12-28	2022-11-20	3.54	2.56	3.51	3.0	0.005	0.76	1.0	0.05	9.66	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8245	1055	5	0	1	0	0	logfile
✔	8HiK	34819	2024-12-28	2022-11-20	3.72	2.46	3.76	3.2	0.005	0.82	0.0	0.05	9.57	0.01	2.282	4.81	0.00	5.3	94.7	0.0	-3.54	0.66	0.63	1.53	3.2	0.004	0.71	0.0	0.04	14.48	0.00	2.450	10.29	2.24	6.3	93.7	0.0	-0.59	0.75	0.69	0.67	1.72	8238	1055	5	0	1	0	0	logfile
✔	8F7R	28908	2024-12-29	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	8.21	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.57	0.0	0.04	13.34	0.00	2.527	8.39	1.74	1.6	98.4	0.0	1.54	1.16	0.57	0.79	2.31	11697	1443	13	0	12	0	0	logfile
✔	8Hii	34817	2024-12-28	2022-11-20	3.57	2.49	3.54	3.0	0.004	0.80	0.0	0.05	9.45	0.01	2.260	3.48	0.00	5.4	94.6	0.0	-3.43	0.72	0.70	2.19	2.2	0.004	0.73	0.0	0.05	14.28	0.00	2.379	11.30	2.24	5.6	94.4	0.0	-0.04	1.65	0.73	0.74	1.77	8212	1055	4	0	0	0	0	logfile
✔	8F7T	28910	2024-12-30	2022-11-20	4.1	4.86	4.16	4.3	0.006	0.88	1.0	0.05	21.49	0.01	1.835	16.60	1.36	10.4	89.0	0.6	-2.43	0.77	0.71	—	4.4	0.003	0.80	0.0	0.05	14.35	0.00	2.374	13.38	0.14	8.1	91.5	0.4	-1.55	1.53	0.79	0.82	—	13326	1641	15	0	21	0	0	logfile
✔	8F7W	28911	2024-12-28	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.29	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.002	0.57	0.0	0.04	13.52	0.00	2.533	6.27	2.03	2.1	97.9	0.0	1.11	1.23	0.62	0.81	2.29	9087	1145	7	0	5	0	0	logfile
✔	8F7S	28909	2024-12-29	2022-11-20	3.0	2.55	2.85	3.0	0.004	0.87	0.0	0.06	8.47	0.01	2.290	3.53	0.00	1.6	98.4	0.0	1.29	0.56	0.77	3.32	2.8	0.002	0.54	0.0	0.04	13.55	0.00	2.419	4.12	1.61	1.2	98.8	0.0	2.49	1.37	0.60	0.83	2.92	9975	1225	14	0	21	0	0	logfile
✔	8F7Q	28907	2024-12-30	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.26	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.54	0.0	0.04	12.09	0.00	2.606	4.63	1.85	1.7	98.3	0.0	2.27	0.62	0.65	0.83	2.59	11994	1484	11	0	10	0	0	logfile
✔	8HiA	34813	2024-12-27	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	8F76	28896	2024-12-28	2022-11-18	3.1	3.33	3.05	3.3	0.005	0.85	0.0	0.05	14.68	0.01	2.245	6.25	0.00	3.2	96.8	0.0	-1.19	0.68	0.83	3.50	3.4	0.003	0.55	0.0	0.04	16.15	0.00	2.553	7.48	2.93	2.8	97.2	0.0	0.67	0.38	0.64	0.85	2.90	8170	1038	6	0	1	0	0	logfile
✔	8F75	28895	2024-12-29	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.82	0.0	0.05	17.25	0.01	2.522	17.75	2.99	5.7	94.3	0.0	-2.65	2.62	0.71	0.71	—	9899	1218	3	0	0	0	0	logfile
✔	8F7A	28899	2024-12-29	2022-11-18	3.78	4.00	3.84	3.9	0.005	0.69	0.0	0.04	15.31	0.00	1.085	12.19	11.80	5.9	93.9	0.1	-2.21	0.69	0.72	0.70	3.9	0.003	0.82	0.0	0.05	16.32	0.00	1.992	11.31	2.99	4.2	95.8	0.0	0.17	1.07	0.74	0.82	1.64	6742	852	3	0	2	0	0	logfile
✔	8F7D	28903	2024-12-27	2022-11-18	4.2	4.28	4.25	4.2	0.005	1.00	0.0	0.05	15.55	0.01	2.264	19.74	0.53	6.7	93.3	0.0	-2.71	0.60	0.60	—	4.2	0.003	0.81	0.0	0.05	13.43	0.00	2.519	18.03	0.13	5.7	94.3	0.0	-2.87	1.96	0.65	0.67	—	6578	811	2	0	0	0	0	logfile
✔	8F7E	28904	2024-12-27	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	4.1	0.004	0.86	0.0	0.05	14.31	0.01	2.391	19.45	0.00	7.3	92.7	0.0	-2.56	2.07	0.58	0.62	—	6642	814	2	0	0	0	0	logfile
✔	8F7C	28902	2024-12-31	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	2.239	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	4.2	0.003	0.59	0.0	0.04	15.98	0.00	2.553	3.07	2.45	2.3	97.7	0.0	1.42	0.98	0.66	0.82	1.51	15925	2009	7	0	0	0	0	logfile

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