Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F75	28895	2024-12-29	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.82	0.0	0.05	17.25	0.01	2.522	17.75	2.99	5.7	94.3	0.0	-2.65	2.62	0.71	0.71	—	9899	1218	3	0	0	0	0	logfile
✔	8F74	28894	2024-12-31	2022-11-18	3.1	3.55	3.19	3.5	0.005	0.72	0.0	0.04	17.29	0.00	2.206	5.81	0.06	2.6	97.4	0.0	0.91	0.63	0.80	1.72	3.5	0.003	0.53	0.0	0.04	16.37	0.00	2.484	7.53	3.15	3.2	96.8	0.0	1.89	0.43	0.62	0.81	1.49	16008	1881	18	0	15	6	0	logfile
✔	8F7D	28903	2024-12-27	2022-11-18	4.2	4.28	4.25	4.2	0.005	1.00	0.0	0.05	15.55	0.01	2.264	19.74	0.53	6.7	93.3	0.0	-2.71	0.60	0.60	—	4.2	0.003	0.81	0.0	0.05	13.43	0.00	2.519	18.03	0.13	5.7	94.3	0.0	-2.87	1.96	0.65	0.67	—	6578	811	2	0	0	0	0	logfile
✔	8F6T	28890	2024-12-27	2022-11-17	2.76	3.61	2.91	3.4	0.004	0.63	0.0	0.04	12.87	0.00	2.119	4.79	0.00	5.4	94.6	0.0	0.80	0.65	0.86	3.26	3.4	0.003	0.57	0.0	0.04	14.95	0.00	2.154	4.21	1.12	5.0	95.0	0.0	1.26	0.35	0.62	0.85	1.95	3473	428	2	0	4	0	0	logfile
✔	8BPR	16164	2024-12-29	2022-11-17	3.65	4.06	3.85	3.9	0.004	0.51	0.0	0.04	17.51	0.00	2.072	3.39	0.66	3.0	97.0	0.0	0.86	0.78	0.76	1.72	3.9	0.003	0.62	0.0	0.04	18.51	0.00	1.968	5.69	2.48	3.2	96.8	0.0	1.86	3.76	0.80	0.80	1.40	10055	1401	14	44	7	0	0	logfile
✔	8HHZ	34808	2024-12-26	2022-11-17	4.28	4.33	4.27	4.2	0.004	0.74	0.0	0.05	12.44	0.01	1.825	22.52	0.00	6.6	93.4	0.0	-1.30	0.47	0.50	—	4.2	0.005	0.76	0.0	0.05	12.77	0.01	2.304	19.22	0.03	7.5	92.5	0.0	-1.77	1.18	0.49	0.53	—	32020	4243	9	0	0	0	0	logfile
✔	8F6R	28889	2024-12-29	2022-11-17	4.0	4.17	3.97	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	4.1	0.003	0.74	0.0	0.04	16.53	0.00	2.414	13.17	1.71	1.4	98.6	0.0	2.89	1.35	0.77	0.81	—	10290	1314	6	0	0	0	0	logfile
✔	8F6Q	28888	2024-12-30	2022-11-17	3.6	3.83	3.72	3.9	0.006	0.72	0.0	0.04	12.98	0.00	2.109	20.44	0.00	2.3	97.7	0.0	0.52	0.75	0.82	0.69	3.9	0.003	0.58	0.0	0.03	16.66	0.00	2.610	11.81	1.69	2.0	98.0	0.0	4.13	0.69	0.73	0.80	1.13	12352	1592	8	0	0	0	0	logfile
✔	8BPC	16149	2024-12-28	2022-11-16	2.8	3.02	2.96	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.53	0.0	0.04	18.01	0.00	1.976	6.74	2.63	2.2	97.8	0.0	1.37	2.45	0.75	0.83	2.63	8433	1030	7	0	6	44	0	logfile
✔	8BPB	16148	2024-12-28	2022-11-16	2.8	2.48	3.00	2.8	0.004	0.61	0.0	0.04	17.77	0.00	1.755	8.92	2.96	2.5	97.5	0.0	0.64	0.74	0.80	2.51	2.8	0.002	0.53	0.0	0.04	18.11	0.00	1.990	6.03	3.07	2.4	97.6	0.0	1.58	1.07	0.72	0.80	2.30	8384	1030	7	0	6	12	0	logfile
✔	8BPA	16147	2024-12-29	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	19.15	0.01	2.049	12.00	4.24	3.7	96.3	0.0	0.39	1.21	0.69	0.66	1.00	10393	1280	6	0	7	0	0	logfile
✔	8HHo	34805	2024-12-27	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	15.65	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.004	0.65	0.0	0.04	16.38	0.00	2.515	13.25	1.52	2.7	97.3	0.0	1.65	0.37	0.47	0.80	1.98	3274	416	2	0	1	0	0	logfile
✔	8F6J	28885	2024-12-29	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.65	0.0	0.04	16.27	0.00	2.095	7.86	3.32	6.5	93.1	0.4	-0.55	0.43	0.72	0.77	1.83	10472	1366	8	0	8	0	0	logfile
✔	8F6i	28884	2024-12-29	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.003	0.63	0.0	0.04	13.78	0.00	1.998	9.72	0.09	5.7	94.3	0.0	0.31	0.46	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	8F6F	28882	2024-12-29	2022-11-16	3.6	3.88	3.63	3.9	0.003	0.52	0.0	0.04	13.45	0.00	2.011	6.45	0.09	4.6	95.3	0.2	-0.37	0.75	0.82	2.79	3.9	0.004	0.68	0.0	0.04	15.55	0.00	1.914	6.99	2.21	5.9	94.0	0.1	-0.22	1.18	0.72	0.82	2.61	10344	1344	8	0	6	0	0	logfile
✔	8F66	28876	2024-12-26	2022-11-16	2.28	3.24	2.38	2.9	0.004	0.74	0.0	0.05	19.00	0.00	2.269	6.86	3.94	3.8	95.5	0.7	0.82	0.82	0.79	4.06	2.9	0.003	0.57	0.0	0.04	17.61	0.00	2.449	3.21	1.26	3.7	96.0	0.3	1.62	0.88	0.85	0.93	3.47	46508	6006	28	0	0	0	0	logfile
✔	8BPG	16152	2024-12-28	2022-11-16	3.1	3.80	3.06	3.3	0.010	1.11	0.0	0.08	12.89	0.01	2.028	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.75	0.0	0.05	14.78	0.00	2.515	7.73	3.47	5.7	94.2	0.1	-0.61	1.47	0.88	0.85	2.20	8650	1106	10	0	6	0	0	logfile
✔	8HHM	34804	2024-12-27	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.53	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.4	0.003	0.57	0.0	0.04	21.33	0.00	2.083	7.45	1.67	1.4	98.6	0.0	2.17	1.78	0.82	0.82	2.32	5558	516	7	72	2	0	0	logfile
✔	8HHL	34803	2024-12-28	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.004	0.57	0.0	0.04	22.89	0.00	1.923	5.39	2.50	0.8	99.2	0.0	2.97	2.37	0.82	0.85	3.72	6971	592	6	111	4	0	0	logfile
✔	8F5Z	28869	2024-12-30	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.003	0.61	0.0	0.04	17.65	0.00	2.521	8.08	3.76	2.3	97.7	0.0	0.70	0.38	0.74	0.76	1.73	13598	1724	4	0	2	0	0	logfile

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