Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DZW	27808	2024-12-27	2022-08-08	2.46	2.76	2.62	2.8	0.007	1.16	9.0	0.06	14.16	0.01	2.112	3.13	1.29	5.5	94.4	0.1	-0.58	0.71	0.81	3.50	2.7	0.005	0.80	0.0	0.05	15.66	0.00	2.132	2.06	1.25	5.1	94.9	0.0	-0.41	1.65	0.70	0.83	3.18	40250	2655	9	0	0	0	20048	logfile
✔	8DZQ	27805	2024-12-28	2022-08-08	2.82	2.18	2.79	2.1	0.004	0.75	0.0	0.05	13.13	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	1.8	0.002	0.60	0.0	0.04	15.47	0.00	2.308	7.13	1.83	5.4	94.6	0.0	0.25	0.32	0.75	0.74	3.03	8342	1100	6	0	1	0	0	logfile
✔	7YR4	34045	2024-12-27	2022-08-08	4.12	4.78	5.11	4.9	0.008	1.16	0.0	0.05	14.91	0.01	2.224	7.76	0.00	6.4	93.6	0.0	-1.79	0.56	0.53	—	4.8	0.003	0.80	0.0	0.05	14.70	0.00	2.354	16.56	0.14	4.7	95.3	0.0	-0.76	3.45	0.63	0.76	—	6394	787	2	0	0	0	0	logfile
✔	7YR0	34041	2024-12-27	2022-08-08	3.98	4.16	3.84	4.1	0.003	0.68	0.0	0.05	15.97	0.00	2.164	11.64	0.00	8.3	91.4	0.2	-1.76	0.64	0.77	2.12	4.1	0.003	0.70	0.0	0.05	15.32	0.00	2.507	8.77	3.93	7.6	92.2	0.2	-1.81	0.48	0.64	0.77	1.70	3383	427	4	0	4	0	0	logfile
✔	8DZR	27806	2024-12-28	2022-08-08	2.61	2.15	2.73	2.0	0.004	0.68	0.0	0.05	12.94	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.004	0.62	0.0	0.04	15.25	0.00	2.487	6.40	2.12	3.9	96.1	0.0	0.74	0.34	0.78	0.79	3.20	7944	1073	6	0	1	0	0	logfile
✔	8DZZ	27810	2024-12-28	2022-08-08	4.1	4.63	4.25	4.1	0.004	0.74	5.0	0.05	12.49	0.00	2.145	3.15	0.25	1.6	98.4	0.0	1.15	0.88	0.81	—	4.1	0.002	0.54	0.0	0.04	12.51	0.00	2.445	5.88	0.00	2.0	98.0	0.0	1.98	0.48	0.89	0.85	—	49596	6110	8	0	8	0	0	logfile
✘	8DZP	27804	2024-12-28	2022-08-08	2.71	2.09	2.70	1.9	0.004	0.68	0.0	0.05	13.62	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1120	6	0	1	0	0	logfile
✔	8AoV	15553	2024-12-26	2022-08-08	2.48	2.62	2.54	2.6	0.003	0.57	0.0	0.04	16.27	0.00	2.044	8.08	2.01	3.0	97.0	0.0	-0.35	0.74	0.84	3.85	2.6	0.007	0.70	0.0	0.05	16.52	0.01	1.895	7.49	2.73	3.8	96.2	0.0	-0.06	0.21	0.74	0.83	4.25	42900	5352	36	0	24	228	0	logfile
✔	7YR5	34046	2024-12-27	2022-08-08	3.63	3.97	3.62	3.9	0.005	0.81	0.0	0.05	13.92	0.00	2.250	8.97	0.00	5.5	94.5	0.0	-0.05	0.57	0.78	1.28	3.9	0.004	0.71	0.0	0.04	16.54	0.00	2.527	11.55	4.36	6.0	94.0	0.0	0.12	0.50	0.58	0.80	0.84	4828	622	2	0	0	0	0	logfile
✔	7YQM	34029	2024-12-27	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.55	0.0	0.04	15.66	0.00	2.623	5.33	1.17	3.7	96.3	0.0	0.64	1.48	0.68	0.80	3.46	5656	723	1	0	0	0	0	logfile
✔	8DZJ	27801	2024-12-28	2022-08-07	2.9	3.60	2.84	3.0	0.004	0.60	0.0	0.04	21.35	0.00	2.209	12.65	0.38	1.5	98.5	0.0	0.94	0.77	0.71	3.07	3.0	0.004	0.64	0.0	0.04	21.38	0.00	2.221	12.09	1.51	2.0	98.0	0.0	1.38	0.57	0.85	0.81	2.69	9030	613	6	190	1	0	0	logfile
✔	7YQK	34028	2024-12-30	2022-08-07	3.38	4.15	3.41	3.2	0.005	0.66	0.0	0.04	26.06	0.00	2.105	13.31	0.00	4.6	95.3	0.1	-0.71	0.92	0.87	2.04	3.2	0.004	0.71	0.0	0.04	26.88	0.00	2.090	12.39	2.44	4.4	95.6	0.0	0.51	0.50	0.93	0.89	1.36	13745	987	13	290	0	0	0	logfile
✔	8DZ3	27787	2024-12-30	2022-08-06	2.7	2.85	2.67	2.9	0.003	0.59	0.0	0.04	15.53	0.00	1.994	7.02	3.48	3.5	96.5	0.0	0.07	0.65	0.83	3.90	2.9	0.007	0.73	0.0	0.05	16.42	0.01	2.477	6.22	3.63	5.8	94.2	0.0	-0.39	0.33	0.64	0.83	4.30	12726	1659	15	0	0	0	0	logfile
✔	7YQC	34023	2024-12-29	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.75	0.0	0.04	17.37	0.00	2.458	4.65	3.47	1.0	99.0	0.0	3.54	0.45	0.65	0.82	2.15	11396	1386	7	0	0	0	0	logfile
✔	7YQD	34024	2024-12-29	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.55	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.60	0.0	0.04	16.64	0.00	2.390	6.45	3.02	0.7	99.3	0.0	4.46	0.66	0.77	0.84	1.18	10290	1330	7	0	0	0	0	logfile
✔	8DZ5	27789	2024-12-28	2022-08-06	3.84	4.27	3.76	4.1	0.003	0.71	0.0	0.04	15.29	0.00	2.167	12.59	0.62	5.4	94.6	0.0	-0.63	0.74	0.82	2.12	4.1	0.006	0.80	0.0	0.05	16.30	0.00	2.497	13.10	3.94	7.9	92.1	0.0	-0.80	1.25	0.75	0.83	1.88	8950	1155	11	0	0	0	0	logfile
✘	8DYY	27786	2024-12-31	2022-08-05	3.62	3.95	3.54	3.9	0.011	0.96	1.0	0.04	14.40	0.00	2.085	10.02	0.33	5.9	94.1	0.0	-0.11	0.77	0.86	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16499	2133	19	0	0	0	0	logfile
✔	8DYT	27781	2024-12-31	2022-08-05	3.3	3.55	3.28	3.5	0.007	0.67	0.0	0.05	15.30	0.01	2.181	8.30	0.45	5.1	94.9	0.0	-0.40	0.80	0.89	4.29	3.5	0.003	0.55	0.0	0.04	15.89	0.00	2.535	6.41	3.32	4.2	95.8	0.0	0.15	1.19	0.82	0.89	4.30	14578	1920	18	0	0	0	0	logfile
✔	8DYU	27782	2024-12-27	2022-08-05	4.0	4.36	4.20	4.3	0.005	0.87	2.0	0.05	14.19	0.01	2.167	4.21	0.23	3.1	96.8	0.0	-0.21	0.72	0.68	—	4.3	0.003	0.61	0.0	0.04	15.90	0.00	2.106	8.17	1.41	2.8	97.2	0.0	0.90	0.87	0.73	0.72	—	48178	3174	4	0	4	0	23568	logfile
✔	8DYV	27783	2024-12-27	2022-08-05	3.97	4.29	4.08	4.2	0.005	0.89	2.0	0.05	15.82	0.01	2.130	5.76	0.20	3.6	96.3	0.0	-0.06	0.72	0.70	0.70	4.2	0.003	0.59	0.0	0.04	16.42	0.00	2.312	9.44	1.73	4.1	95.9	0.0	0.24	0.52	0.72	0.69	0.38	45926	2854	3	0	4	0	22874	logfile

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