Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DYV	27783	2024-12-27	2022-08-05	3.97	4.29	4.08	4.2	0.005	0.89	2.0	0.05	15.82	0.01	2.130	5.76	0.20	3.6	96.3	0.0	-0.06	0.72	0.70	0.70	4.2	0.003	0.59	0.0	0.04	16.42	0.00	2.312	9.44	1.73	4.1	95.9	0.0	0.24	0.52	0.72	0.69	0.38	45926	2854	3	0	4	0	22874	logfile
✘	7YQ4	34019	2024-12-29	2022-08-05	3.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10618	1243	5	24	0	0	0	logfile
✔	8DYT	27781	2024-12-31	2022-08-05	3.3	3.55	3.28	3.5	0.007	0.67	0.0	0.05	15.30	0.01	2.181	8.30	0.45	5.1	94.9	0.0	-0.40	0.80	0.89	4.29	3.5	0.003	0.55	0.0	0.04	15.89	0.00	2.535	6.41	3.32	4.2	95.8	0.0	0.15	1.19	0.82	0.89	4.30	14578	1920	18	0	0	0	0	logfile
✘	8DYY	27786	2024-12-31	2022-08-05	3.62	3.95	3.54	3.9	0.011	0.96	1.0	0.04	14.40	0.00	2.085	10.02	0.33	5.9	94.1	0.0	-0.11	0.77	0.86	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16499	2133	19	0	0	0	0	logfile
✘	7YQ3	34018	2024-12-31	2022-08-05	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14412	1707	5	28	0	0	0	logfile
✔	7YPQ	34011	2024-12-27	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.79	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	3.2	0.005	0.59	0.0	0.04	19.36	0.00	2.537	7.57	1.61	2.2	97.8	0.0	0.11	0.31	0.52	0.80	2.26	2915	327	2	11	0	0	0	logfile
✘	8AN3	15531	2024-12-28	2022-08-04	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.24	—	—	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.16	—	—	—	1.63	8721	1040	20	0	68	0	0	logfile
✔	8AMX	15528	2024-12-31	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.003	0.56	0.0	0.04	15.17	0.00	2.625	3.26	0.50	3.2	96.4	0.3	2.78	0.24	0.69	0.89	2.98	15633	2024	16	0	0	57	0	logfile
✔	7YPX	34017	2024-12-28	2022-08-04	3.12	4.18	3.16	3.7	0.004	0.57	0.0	0.04	10.61	0.00	2.092	12.71	0.00	3.7	96.3	0.0	-0.23	0.91	0.85	2.88	3.7	0.003	0.68	0.0	0.04	12.65	0.00	2.458	10.40	1.04	2.9	97.1	0.0	-0.35	1.13	0.92	0.86	2.27	8808	1236	6	0	0	0	0	logfile
✔	8AMW	15527	2024-12-31	2022-08-04	3.0	3.27	3.03	3.2	0.005	0.61	0.0	0.04	11.06	0.01	2.245	3.30	0.44	3.9	96.1	0.0	1.57	0.63	0.87	3.65	3.2	0.002	0.53	0.0	0.04	13.66	0.00	2.468	4.34	1.25	3.4	96.6	0.0	2.43	0.27	0.66	0.88	2.51	15792	2032	21	0	16	5	0	logfile
✔	8AN1	15529	2024-12-27	2022-08-04	3.93	4.18	3.94	4.0	0.002	0.47	0.0	0.04	11.04	0.00	2.168	6.31	3.10	3.4	96.5	0.1	1.42	0.83	0.81	1.35	4.0	0.003	0.64	0.0	0.04	14.08	0.00	2.129	6.24	3.82	4.6	95.3	0.1	0.97	1.16	0.83	0.81	1.27	47790	6255	18	0	0	0	0	logfile
✘	8AN2	15530	2024-12-28	2022-08-04	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.32	—	—	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.62	—	—	—	3.09	8657	1040	18	0	63	0	0	logfile
✔	7YPo	34010	2024-12-29	2022-08-04	3.5	3.79	3.56	3.8	0.004	0.59	0.0	0.04	16.33	0.00	2.091	11.72	0.00	4.7	95.3	0.0	-1.80	0.56	0.78	2.30	3.8	0.003	0.59	0.0	0.04	18.67	0.00	2.483	8.88	2.02	3.3	96.7	0.0	-1.01	0.57	0.55	0.77	2.35	11324	1308	5	28	0	0	0	logfile
✔	7YPG	33999	2024-12-27	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.66	0.0	0.05	17.43	0.00	2.641	8.29	5.77	8.2	91.8	0.0	-5.34	0.98	0.41	0.82	3.15	2676	354	6	0	0	0	0	logfile
✔	8DY9	27778	2024-12-30	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.51	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.53	1.0	0.04	18.21	0.00	2.184	2.99	0.48	5.1	94.9	0.0	0.39	0.21	0.77	0.80	2.28	63435	3777	16	144	5	0	31140	logfile
✔	8DY7	27777	2024-12-30	2022-08-03	3.18	3.44	3.26	3.4	0.003	0.65	0.0	0.04	17.41	0.00	1.507	3.64	0.00	4.3	95.7	0.0	0.22	0.71	0.81	2.62	3.4	0.003	0.63	0.0	0.04	18.41	0.00	1.970	3.20	0.40	4.0	96.0	0.0	0.49	0.32	0.73	0.83	2.38	61085	3612	14	149	5	0	29915	logfile
✔	8AMF	15525	2024-12-29	2022-08-03	3.8	4.56	—	4.4	0.007	0.99	0.0	0.07	18.67	0.01	2.281	6.91	0.77	7.6	92.4	0.0	-3.87	0.55	0.84	1.57	4.4	0.004	0.74	0.0	0.05	19.53	0.00	2.339	9.38	2.50	5.8	94.2	0.0	-0.92	1.36	0.55	0.83	1.44	10507	1332	10	20	4	0	0	logfile
✔	8DYA	27779	2024-12-28	2022-08-03	3.67	4.01	3.65	4.0	0.010	1.49	3.0	0.10	10.00	0.01	1.995	1.41	0.56	3.9	95.6	0.5	0.63	0.63	0.66	2.75	4.0	0.004	0.66	0.0	0.04	13.30	0.00	2.589	4.43	3.17	4.1	95.7	0.3	1.25	0.73	0.70	0.75	2.66	7896	1164	6	0	18	0	0	logfile
✔	8DXR	27774	2024-12-29	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	7YoV	33988	2024-12-30	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.65	0.0	0.04	15.23	0.00	2.410	9.17	1.47	3.2	96.8	0.0	0.18	2.49	0.74	0.81	1.45	13232	1683	5	0	0	0	0	logfile

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