Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YoY	33990	2024-12-27	2022-08-02	3.64	4.09	3.73	4.0	0.008	1.11	0.0	0.07	13.20	0.01	2.303	3.96	0.20	9.6	90.4	0.0	-3.78	0.66	0.80	3.17	4.0	0.003	0.76	0.0	0.04	15.16	0.00	2.242	8.62	2.65	6.2	93.8	0.0	-1.73	0.54	0.68	0.81	2.76	4517	593	5	0	0	0	0	logfile
✔	7YoT	33986	2024-12-30	2022-08-02	3.0	3.12	2.07	3.1	0.009	1.03	0.0	0.06	10.47	0.01	2.279	4.54	0.66	4.2	95.8	0.0	-3.64	0.71	0.85	3.78	3.1	0.003	0.57	0.0	0.04	15.32	0.00	2.489	5.93	2.12	2.6	97.4	0.0	0.60	0.60	0.68	0.85	2.54	12182	1551	5	0	0	0	0	logfile
✔	8DXQ	27773	2024-12-29	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.003	0.60	0.0	0.04	5.08	0.00	2.517	0.20	0.00	10.4	89.6	0.0	0.07	0.31	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	7YoX	33989	2024-12-30	2022-08-02	3.95	4.33	4.09	4.1	0.006	1.31	8.0	0.10	27.06	0.01	0.786	33.58	46.70	1.0	98.8	0.2	2.84	0.82	0.70	0.48	4.1	0.004	0.81	0.0	0.05	19.20	0.00	2.341	20.84	6.72	2.8	97.2	0.0	0.10	1.07	0.84	0.77	0.36	13878	1749	6	0	0	0	0	logfile
✔	7YP7	33995	2024-12-30	2022-08-02	3.1	3.27	3.27	3.2	0.007	0.95	0.0	0.06	15.19	0.01	1.823	5.31	1.44	7.7	91.7	0.6	-4.81	0.78	0.83	3.48	3.2	0.003	0.67	0.0	0.04	16.30	0.00	2.540	5.05	3.00	4.7	95.0	0.3	-0.91	1.27	0.81	0.86	2.78	7909	1007	5	0	0	0	0	logfile
✔	7YoZ	33991	2024-12-28	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.41	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.72	0.0	0.04	29.17	0.00	2.531	17.55	0.00	1.4	98.6	0.0	0.69	1.77	0.89	0.83	—	9752	594	10	242	0	0	0	logfile
✔	8DXR	27774	2024-12-29	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.48	0.0	0.04	2.98	0.00	2.602	0.60	0.00	5.1	94.8	0.1	1.93	0.41	0.67	0.70	—	10435	2101	7	0	0	0	0	logfile
✔	8DWV	27761	2024-12-31	2022-08-02	3.6	4.99	3.80	3.6	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.7	0.006	0.89	0.0	0.05	16.20	0.00	2.498	24.31	1.16	10.7	88.9	0.4	-1.55	2.24	0.89	0.82	0.77	16480	2084	6	0	0	0	0	logfile
✔	7YP2	33994	2024-12-27	2022-08-02	3.52	3.74	3.49	3.7	0.007	0.93	0.0	0.05	14.66	0.01	2.294	3.19	0.00	8.0	92.0	0.0	-4.80	0.68	0.87	2.84	3.7	0.003	0.58	0.0	0.04	15.57	0.00	2.571	4.50	1.49	5.7	94.3	0.0	-1.25	0.43	0.63	0.85	2.92	4248	546	3	0	0	0	0	logfile
✔	7Yo3	33980	2024-12-28	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.9	0.002	0.53	0.0	0.04	16.17	0.00	2.024	6.51	1.65	2.4	97.6	0.0	0.86	0.74	0.30	0.73	2.42	8961	1144	3	0	3	0	0	logfile
✔	8DWG	27753	2024-12-28	2022-08-01	2.71	2.08	2.72	1.8	0.005	0.60	0.0	0.04	12.58	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.9	0.003	0.57	0.0	0.04	14.83	0.00	2.538	4.29	2.81	3.8	96.2	0.0	1.27	0.34	0.80	0.83	3.76	8350	1101	7	0	1	0	0	logfile
✔	8DWC	27752	2024-12-28	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.28	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.003	0.56	0.0	0.04	15.10	0.00	2.564	4.57	1.42	3.3	96.7	0.0	1.31	0.36	0.77	0.83	2.91	8298	1102	6	0	0	0	0	logfile
✔	8ALZ	15521	2024-12-31	2022-08-01	3.4	4.20	3.41	3.8	0.003	0.72	0.0	0.04	16.77	0.01	2.204	15.40	0.39	4.5	95.4	0.0	-0.91	0.90	0.78	0.63	3.8	0.003	0.77	0.0	0.05	17.38	0.00	2.452	15.15	2.93	5.4	94.6	0.0	-1.09	0.92	0.91	0.82	0.88	16409	2041	3	0	2	0	0	logfile
✔	8DWi	27755	2024-12-27	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.60	0.01	2.552	10.92	1.91	5.5	94.5	0.0	-0.61	1.64	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	8DWH	27754	2024-12-27	2022-08-01	3.25	2.21	3.25	2.1	0.004	0.57	0.0	0.04	12.92	0.00	2.129	7.56	0.00	3.4	96.6	0.0	-0.94	0.73	0.78	4.11	2.1	0.004	0.62	0.0	0.04	15.37	0.00	2.415	5.33	2.33	3.4	96.6	0.0	1.01	0.96	0.74	0.80	3.23	6444	858	5	0	1	0	0	logfile
✔	7YoJ	33983	2024-12-29	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	24.11	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.03	23.71	0.00	2.334	10.28	2.46	4.2	95.8	0.0	0.32	1.01	0.78	0.81	1.84	11545	867	4	216	0	0	0	logfile
✔	7Yoo	33985	2024-12-28	2022-08-01	3.11	2.28	—	3.2	0.003	0.44	0.0	0.04	13.43	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.55	0.0	0.04	15.17	0.00	2.563	3.93	1.89	3.0	97.0	0.0	0.61	0.93	0.79	0.84	3.19	9188	1169	6	0	0	0	0	logfile
✔	7YoN	33984	2024-12-28	2022-08-01	2.95	2.24	—	3.0	0.003	0.49	0.0	0.04	13.74	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.003	0.90	1.0	0.05	15.77	0.00	2.088	3.34	2.29	2.3	97.6	0.1	1.23	0.37	0.78	0.85	3.08	9161	1166	8	0	0	2	0	logfile
✔	8DWJ	27756	2024-12-27	2022-08-01	3.9	3.19	3.82	3.1	0.005	1.05	0.0	0.06	16.24	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.0	0.003	0.72	0.0	0.05	17.94	0.01	2.511	12.54	1.00	5.6	94.4	0.0	-0.94	1.73	0.34	0.58	0.90	3043	339	4	11	2	0	0	logfile
✔	7YNo	33967	2024-12-27	2022-07-31	2.8	2.92	2.23	3.1	0.008	0.79	0.0	0.05	12.19	0.00	2.252	22.12	0.00	7.3	92.7	0.0	-3.47	0.41	0.77	5.69	3.1	0.004	0.71	0.0	0.06	14.81	0.00	2.629	7.63	1.94	5.1	94.9	0.0	-2.19	0.91	0.43	0.80	5.36	2562	366	8	0	2	0	0	logfile

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