Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8DR5	27671	2024-12-26	2022-07-20	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45387	2749	17	50	8	0	22607	logfile
✔	8DR8	27674	2024-12-31	2022-07-20	3.04	3.55	3.20	3.5	0.007	0.82	0.0	0.05	20.92	0.00	2.216	6.05	0.17	2.2	97.8	0.0	0.91	0.61	0.79	1.54	3.5	0.003	0.51	0.0	0.04	16.86	0.00	2.487	8.10	2.92	2.3	97.7	0.0	2.20	0.40	0.58	0.78	1.40	16270	1878	18	0	20	6	0	logfile
✘	8DQW	27662	2024-12-26	2022-07-20	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46577	2802	25	36	8	429	22948	logfile
✔	8DR6	27672	2024-12-26	2022-07-20	2.39	3.20	2.47	3.0	0.002	0.52	0.0	0.04	17.90	0.00	1.996	3.30	0.95	1.3	98.7	0.0	2.01	0.85	0.85	3.82	3.0	0.003	0.54	0.0	0.04	18.11	0.00	1.782	2.34	0.48	1.9	98.1	0.0	1.85	1.01	0.77	0.86	3.75	43630	2608	20	63	9	12	21632	logfile
✘	7YJN	33875	2024-12-28	2022-07-20	3.4	3.63	3.43	3.6	0.019	1.74	21.0	0.13	15.89	0.01	1.776	26.04	8.37	11.1	87.0	1.9	-2.39	0.70	0.83	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8528	1095	6	0	1	0	0	logfile
✔	8DRA	27675	2024-12-29	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	4.0	0.003	0.74	0.0	0.04	17.43	0.00	2.481	17.84	3.51	5.7	94.3	0.0	-2.69	2.05	0.67	0.75	0.88	9899	1218	3	0	0	0	0	logfile
✘	8DR3	27669	2024-12-26	2022-07-20	2.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45966	2758	21	64	8	12	22837	logfile
✘	8DR1	27668	2024-12-26	2022-07-20	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43642	2608	21	64	8	12	21643	logfile
✘	8DQZ	27666	2024-12-26	2022-07-20	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	42766	2599	15	41	8	0	21314	logfile
✘	8DR0	27667	2024-12-26	2022-07-20	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	42894	2608	15	41	8	0	21380	logfile
✘	8DQX	27663	2024-12-26	2022-07-20	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43185	2598	26	27	8	866	21155	logfile
✔	7YJM	33874	2024-12-28	2022-07-20	3.2	3.29	3.09	3.2	0.006	1.05	0.0	0.06	19.54	0.00	1.946	17.47	17.31	9.4	89.4	1.2	-4.69	0.74	0.88	2.07	3.2	0.003	0.65	0.0	0.04	17.16	0.00	2.545	4.16	3.42	4.3	95.4	0.3	-0.83	0.41	0.73	0.89	2.16	8895	1120	7	0	2	0	0	logfile
✘	8DR4	27670	2024-12-26	2022-07-20	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43483	2600	17	63	8	0	21561	logfile
✔	7YJ1	33868	2024-12-28	2022-07-19	3.1	3.27	3.03	3.2	0.006	0.84	0.0	0.05	18.00	0.00	1.486	11.68	9.53	7.4	91.9	0.7	-3.00	0.72	0.88	2.84	3.2	0.004	0.62	0.0	0.04	16.85	0.00	2.291	3.06	2.05	4.8	95.2	0.0	-0.02	0.36	0.72	0.88	2.30	9140	1154	6	0	1	0	0	logfile
✔	7YJ4	33871	2024-12-28	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	3.4	0.003	0.68	0.0	0.04	16.21	0.00	2.395	9.23	1.44	5.5	94.5	0.0	-0.40	0.69	0.62	0.78	2.18	8985	1154	7	0	0	0	0	logfile
✔	7YJ2	33869	2024-12-28	2022-07-19	2.9	3.04	2.91	3.0	0.010	1.03	0.0	0.07	17.03	0.01	2.119	9.08	8.32	7.1	92.3	0.6	-3.30	0.69	0.86	3.49	3.0	0.003	0.60	0.0	0.04	16.92	0.00	2.603	3.01	2.47	4.8	95.2	0.0	-0.34	0.42	0.68	0.87	2.45	9124	1154	6	0	1	0	0	logfile
✔	8DQL	27656	2024-12-27	2022-07-19	3.0	2.95	2.90	2.9	0.002	0.47	0.0	0.04	14.89	0.00	2.309	5.10	0.00	3.6	96.4	0.0	2.01	0.74	0.81	1.75	2.9	0.003	0.63	0.0	0.04	16.82	0.00	2.405	4.48	1.65	4.1	95.9	0.0	1.70	3.33	0.76	0.84	1.85	6402	771	3	0	0	0	0	logfile
✔	8AG5	15416	2024-12-30	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.004	0.76	1.0	0.05	17.87	0.00	2.325	6.86	2.81	3.4	96.6	0.0	0.53	0.25	0.76	0.78	2.98	13762	1703	4	0	0	0	0	logfile
✔	8AG3	15414	2024-12-27	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.004	0.63	0.0	0.04	17.31	0.01	2.509	9.47	3.25	8.2	91.8	0.0	-1.26	0.32	0.62	0.75	2.96	2632	322	2	0	0	0	0	logfile
✔	8AG4	15415	2024-12-29	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.6	0.003	0.53	0.0	0.04	15.63	0.00	2.552	4.31	0.95	3.6	96.4	0.0	0.78	0.31	0.81	0.83	3.74	11155	1384	4	0	0	0	0	logfile

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