Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YiU	33864	2024-12-29	2022-07-18	2.9	3.02	2.83	3.0	0.007	1.08	1.0	0.07	19.63	0.01	1.932	14.64	16.13	6.5	92.3	1.2	-4.83	0.69	0.87	2.38	3.0	0.003	0.63	0.0	0.04	17.63	0.00	2.564	3.70	3.25	4.8	95.2	0.0	-0.56	1.17	0.70	0.88	2.38	9285	1166	7	0	4	0	0	logfile
✔	7YiX	33865	2024-12-29	2022-07-18	2.96	3.52	3.10	3.4	0.003	0.51	0.0	0.04	13.44	0.00	2.001	3.35	0.00	3.6	96.4	0.0	-0.34	0.63	0.78	3.94	3.5	0.002	0.49	0.0	0.04	15.38	0.00	2.092	3.49	1.54	2.8	97.2	0.0	-0.16	1.14	0.64	0.80	3.53	11080	1416	10	0	20	0	0	logfile
✔	8AFM	15402	2024-12-28	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.81	0.0	0.04	15.70	0.01	2.330	13.56	0.00	5.9	94.1	0.0	-1.07	2.14	0.49	0.58	—	7842	1010	12	0	0	0	0	logfile
✔	8AFX	15411	2024-12-27	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.03	0.00	2.612	10.54	0.00	6.8	93.2	0.0	-1.16	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile
✔	8AFH	15398	2024-12-30	2022-07-18	3.9	2.50	3.75	3.1	0.006	0.70	0.0	0.04	14.17	0.00	2.160	15.04	0.00	4.9	95.1	0.0	-1.29	0.61	0.62	1.09	2.1	0.003	0.61	0.0	0.04	17.37	0.00	2.444	8.97	4.01	4.0	96.0	0.0	1.57	1.60	0.63	0.66	0.73	13570	1760	20	0	0	0	0	logfile
✔	8AFL	15401	2024-12-27	2022-07-18	4.4	3.03	4.24	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.75	0.0	0.04	15.48	0.00	2.408	12.80	0.00	5.5	94.5	0.0	-1.26	0.76	0.59	0.58	—	3921	505	6	0	0	0	0	logfile
✘	7YiY	33866	2024-12-28	2022-07-18	2.7	2.84	2.66	2.8	0.008	0.98	0.0	0.06	16.23	0.01	2.205	6.16	4.77	5.2	94.2	0.6	-1.48	0.71	0.87	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9257	1164	7	0	2	0	0	logfile
✔	7YiM	33861	2024-12-27	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.004	0.69	0.0	0.04	17.93	0.00	2.497	8.56	1.36	3.4	96.6	0.0	0.75	1.26	0.64	0.66	0.87	4657	592	1	0	0	0	0	logfile
✔	8AFE	15395	2024-12-27	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.005	0.66	0.0	0.04	16.55	0.00	2.512	10.74	4.44	4.5	95.5	0.0	0.53	0.40	0.62	0.69	1.13	6785	880	10	0	0	0	0	logfile
✔	8DPS	27641	2024-12-29	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.033	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.004	0.78	0.0	0.05	15.53	0.00	2.514	9.10	2.52	3.6	96.4	0.0	0.18	0.51	0.68	0.74	1.53	10610	1324	12	0	14	0	0	logfile
✔	8DPT	27642	2024-12-31	2022-07-17	4.0	4.13	3.96	4.1	0.004	1.20	2.0	0.06	14.57	0.01	2.026	16.97	0.41	5.5	93.9	0.6	-0.83	0.64	0.68	—	4.1	0.003	0.76	0.0	0.04	15.22	0.01	2.526	9.93	1.91	4.3	95.7	0.0	0.32	0.62	0.70	0.76	—	13550	1714	12	0	14	0	0	logfile
✔	8AFA	15393	2024-12-28	2022-07-16	3.16	3.52	3.20	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.50	0.0	0.04	15.27	0.00	2.537	8.54	2.01	1.6	98.4	0.0	2.70	0.34	0.58	0.81	2.11	9008	1208	6	0	0	0	0	logfile
✔	7Yi9	33854	2024-12-27	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.62	0.0	0.04	17.64	0.00	2.118	8.39	3.99	4.4	95.6	0.0	-0.40	1.96	0.64	0.78	3.03	5226	634	5	0	1	0	0	logfile
✔	8DPH	27635	2024-12-28	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.56	0.0	0.04	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.60	0.0	0.04	13.94	0.00	2.538	4.64	1.95	2.9	97.1	0.0	1.65	1.05	0.78	0.77	2.22	8182	1093	6	0	3	0	0	logfile
✔	7Yi8	33853	2024-12-27	2022-07-15	2.7	2.97	2.76	2.9	0.003	0.61	0.0	0.04	14.73	0.00	2.179	9.92	0.00	4.0	96.0	0.0	-0.52	0.69	0.74	2.24	2.9	0.002	0.58	0.0	0.04	17.65	0.00	2.523	8.11	2.25	3.4	96.6	0.0	-0.62	0.96	0.68	0.77	1.94	5225	635	5	0	0	0	0	logfile
✔	8DPG	27634	2024-12-28	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.004	0.63	0.0	0.04	13.52	0.00	2.535	4.84	1.83	2.7	97.3	0.0	1.76	1.10	0.76	0.73	1.65	8162	1093	6	0	2	0	0	logfile
✔	8DPF	27633	2024-12-28	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.74	0.0	0.06	11.29	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.66	0.0	0.04	14.67	0.00	2.579	3.52	2.32	2.3	97.7	0.0	1.16	1.35	0.80	0.80	3.26	8160	1093	6	0	2	0	0	logfile
✔	8DPi	27636	2024-12-28	2022-07-15	3.4	2.28	3.42	2.1	0.003	0.52	0.0	0.06	11.00	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.65	0.0	0.04	14.29	0.00	2.543	5.98	3.54	3.2	96.8	0.0	1.24	0.60	0.75	0.73	2.45	8150	1093	6	0	2	0	0	logfile
✔	7Yi1	33848	2024-12-30	2022-07-14	2.8	2.41	2.78	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.004	0.58	0.0	0.04	27.65	0.00	2.149	6.23	2.35	1.8	98.2	0.0	1.74	0.23	0.81	0.86	2.72	13926	967	12	302	0	0	0	logfile
✘	8DP0	27627	2024-12-28	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8894	1104	2	0	0	0	0	logfile

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