Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Yi1	33848	2024-12-30	2022-07-14	2.8	2.41	2.78	2.6	0.003	0.57	0.0	0.03	26.98	0.00	2.155	7.30	0.37	1.9	98.1	0.0	0.11	0.81	0.84	2.94	2.6	0.004	0.58	0.0	0.04	27.65	0.00	2.149	6.23	2.35	1.8	98.2	0.0	1.74	0.23	0.81	0.86	2.72	13926	967	12	302	0	0	0	logfile
✘	8DP0	27627	2024-12-28	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8894	1104	2	0	0	0	0	logfile
✔	8AEX	15388	2024-12-27	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.006	0.84	0.0	0.06	17.76	0.00	2.375	11.04	4.04	7.8	92.2	0.0	-2.46	0.37	0.49	0.87	4.79	4665	680	10	0	0	0	0	logfile
✔	7Yi3	33850	2024-12-29	2022-07-14	3.3	2.58	3.25	3.1	0.003	0.52	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	2.5	0.003	0.53	0.0	0.04	16.97	0.00	2.041	6.71	2.67	6.3	93.7	0.0	0.38	0.27	0.73	0.78	2.07	11425	1392	7	0	5	0	0	logfile
✔	8DoU	27623	2024-12-30	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.67	0.0	0.04	16.52	0.00	2.420	6.42	3.53	5.5	94.5	0.0	-0.14	0.55	0.73	0.80	1.53	10666	1300	6	0	2	0	0	logfile
✔	7Yi0	33845	2024-12-30	2022-07-14	3.2	3.31	3.15	3.3	0.003	0.57	0.0	0.04	15.67	0.00	2.105	8.46	0.93	5.7	94.3	0.0	-0.27	0.62	0.62	1.43	3.3	0.003	0.61	0.0	0.04	17.35	0.00	2.086	7.38	2.46	5.9	94.1	0.0	0.81	1.01	0.68	0.74	1.76	13430	1638	9	0	7	0	0	logfile
✔	7Yi2	33849	2024-12-30	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.003	0.57	0.0	0.04	19.07	0.00	2.052	7.40	2.90	7.3	92.7	0.0	-0.20	0.32	0.75	0.77	2.09	12140	1397	9	33	5	0	0	logfile
✔	7YHK	33831	2024-12-31	2022-07-13	3.14	3.38	3.17	3.4	0.007	0.99	0.0	0.06	14.13	0.01	2.022	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.007	0.76	1.0	0.04	15.68	0.01	0.625	7.19	1.84	3.8	96.2	0.0	-1.37	0.42	0.70	0.88	4.09	14502	1812	15	0	18	0	0	logfile
✔	8Do3	27589	2024-12-27	2022-07-12	3.22	3.50	3.23	3.5	0.004	0.62	0.0	0.04	13.22	0.02	2.452	6.81	0.00	2.3	97.7	0.0	2.39	0.54	0.79	2.25	3.5	0.004	0.62	0.0	0.04	14.50	0.00	2.604	7.40	2.01	2.5	97.5	0.0	2.75	1.11	0.54	0.81	1.89	4185	534	4	0	1	0	0	logfile
✘	8DNY	27584	2024-12-27	2022-07-12	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4428	558	8	0	1	0	97	logfile
✔	8Do2	27588	2024-12-27	2022-07-12	2.95	3.24	2.95	3.2	0.005	0.73	0.0	0.04	12.56	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.003	0.55	0.0	0.04	14.92	0.00	2.617	6.86	1.11	1.7	98.3	0.0	2.76	0.31	0.58	0.82	1.95	4226	541	4	0	1	0	0	logfile
✘	8DNX	27583	2024-12-27	2022-07-12	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4342	549	8	0	1	0	71	logfile
✔	7YH6	33820	2024-12-27	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.67	0.0	0.05	14.70	0.00	2.529	5.68	1.39	5.7	94.3	0.0	-0.63	0.74	0.66	0.86	3.16	3343	430	4	0	1	0	0	logfile
✔	8DNW	27582	2024-12-27	2022-07-12	3.4	3.74	3.38	3.7	0.003	0.51	0.0	0.04	12.46	0.00	1.976	5.57	0.00	1.4	98.6	0.0	2.85	0.58	0.79	1.72	3.7	0.003	0.57	0.0	0.04	14.15	0.00	2.578	5.33	1.15	1.6	98.4	0.0	3.19	1.10	0.56	0.80	1.70	4060	528	3	0	0	0	0	logfile
✔	8Do6	27593	2024-12-30	2022-07-12	3.1	3.31	3.16	3.3	0.005	0.68	0.0	0.04	18.00	0.00	2.146	16.58	0.62	6.3	93.2	0.4	-1.21	0.69	0.77	1.74	3.3	0.006	1.04	2.0	0.05	18.81	0.00	1.968	17.49	2.26	6.5	93.2	0.4	-0.95	0.41	0.68	0.77	1.65	12980	1450	9	61	0	0	0	logfile
✔	8DNV	27581	2024-12-27	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.003	0.52	0.0	0.04	13.83	0.00	2.547	4.94	0.67	2.3	97.7	0.0	2.55	0.39	0.56	0.82	3.09	4157	535	3	0	0	0	0	logfile
✘	7YG9	33812	2024-12-28	2022-07-11	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8630	0	4	404	8	0	0	logfile
✘	7YGA	33813	2024-12-28	2022-07-11	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8692	0	4	407	8	0	0	logfile
✔	8ADS	15369	2024-12-27	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.005	0.66	0.0	0.05	16.65	0.00	2.611	9.98	3.46	3.5	96.5	0.0	-3.64	0.54	0.49	0.82	5.76	5170	750	10	0	0	0	0	logfile
✘	7YGC	33815	2024-12-28	2022-07-11	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8690	0	4	407	6	0	0	logfile

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