Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YAD	33709	2024-12-27	2022-06-27	2.66	2.45	2.92	2.2	0.003	0.55	0.0	0.04	12.51	0.00	2.165	5.84	0.00	4.5	95.3	0.1	-1.22	0.71	0.77	3.55	2.1	0.004	0.61	0.0	0.05	14.81	0.00	2.505	4.93	1.26	6.0	93.9	0.1	-1.18	2.15	0.74	0.81	3.06	6728	848	8	0	6	0	0	logfile
✔	8A93	15267	2024-12-28	2022-06-27	3.05	3.59	3.21	3.4	0.005	0.57	0.0	0.04	18.98	0.00	2.072	4.02	0.64	3.4	96.6	0.0	1.45	0.73	0.86	2.30	3.4	0.003	0.55	0.0	0.04	19.29	0.00	1.991	3.81	1.75	2.8	97.2	0.0	1.70	1.24	0.71	0.86	2.16	7353	828	9	44	4	0	0	logfile
✔	8DHM	27436	2024-12-30	2022-06-27	2.73	3.45	2.74	3.3	0.006	0.76	0.0	0.04	12.98	0.01	2.002	5.25	0.65	1.7	98.3	0.0	0.74	0.71	0.83	3.56	3.2	0.004	0.58	0.0	0.04	13.89	0.00	2.384	2.93	0.32	1.7	98.3	0.0	3.71	1.19	0.64	0.88	3.09	11698	734	6	0	5	91	5900	logfile
✔	7YAC	33708	2024-12-28	2022-06-27	3.24	2.68	3.20	3.0	0.004	0.59	0.0	0.04	14.30	0.00	2.235	6.23	0.00	3.9	96.1	0.0	0.07	0.65	0.79	2.16	3.1	0.003	0.62	0.0	0.04	16.37	0.00	2.576	5.56	2.46	5.3	94.6	0.1	0.06	1.26	0.66	0.82	1.86	8937	1140	6	0	1	0	0	logfile
✔	7Y9U	33692	2024-12-28	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.06	2.0	0.06	10.08	0.01	2.034	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.002	0.61	0.0	0.04	13.94	0.00	2.586	3.89	1.33	2.8	97.2	0.0	-0.93	1.26	0.62	0.85	2.25	7748	988	6	0	2	0	0	logfile
✔	7Y9T	33691	2024-12-28	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.034	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.65	0.0	0.04	13.66	0.00	2.609	4.47	1.68	4.6	95.4	0.0	-1.13	0.59	0.66	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	7Y9Y	33696	2024-12-30	2022-06-26	2.77	3.00	2.82	3.0	0.003	0.60	0.0	0.04	17.98	0.01	2.064	8.75	1.63	1.5	98.5	0.0	0.08	0.70	0.83	3.22	3.0	0.002	0.56	0.0	0.04	18.06	0.00	2.105	5.83	1.93	1.8	98.2	0.0	0.57	0.43	0.64	0.82	3.11	13781	1545	5	61	4	0	0	logfile
✔	7YA0	33698	2024-12-29	2022-06-26	3.1	3.62	3.66	3.3	0.003	0.68	0.0	0.05	14.04	0.00	2.001	9.13	0.19	5.5	94.2	0.3	-0.72	0.75	0.78	1.83	3.3	0.004	0.65	0.0	0.04	14.96	0.00	2.082	7.80	0.67	5.6	94.3	0.1	-0.41	0.41	0.75	0.82	1.72	39996	4917	27	0	66	0	0	logfile
✔	7Y9V	33693	2024-12-28	2022-06-26	3.2	3.43	3.15	3.4	0.013	1.21	6.0	0.06	10.86	0.01	2.030	4.79	0.48	5.1	94.9	0.0	-5.91	0.62	0.83	3.18	3.4	0.003	0.68	0.0	0.04	13.64	0.00	2.583	5.43	2.89	4.1	95.9	0.0	-0.08	1.21	0.62	0.85	2.44	7734	988	8	0	2	4	0	logfile
✘	8DH6	27430	2024-12-30	2022-06-25	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12901	1560	16	0	17	0	0	logfile
✔	8DHA	27434	2024-12-27	2022-06-25	3.8	4.85	4.37	4.8	0.004	0.76	0.0	0.05	17.10	0.01	2.155	15.08	0.49	4.8	95.2	0.0	0.08	0.69	0.73	0.68	4.8	0.003	0.75	0.0	0.05	17.49	0.00	2.563	9.82	3.46	4.6	95.4	0.0	-0.18	0.55	0.69	0.72	1.00	3510	439	5	0	2	0	0	logfile
✔	8DH7	27431	2024-12-28	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.003	0.56	0.0	0.05	15.73	0.00	2.467	4.97	1.66	2.2	97.7	0.1	0.81	0.39	0.75	0.88	3.34	8274	1052	2	0	0	0	0	logfile
✔	8DH9	27433	2024-12-29	2022-06-25	4.5	3.05	4.86	4.5	0.003	0.65	0.0	0.04	12.03	0.00	2.073	13.96	0.08	2.8	96.9	0.2	0.38	0.65	0.52	—	2.4	0.004	0.76	0.0	0.05	12.70	0.01	2.478	14.30	0.00	4.6	95.3	0.1	-0.30	1.10	0.69	0.60	—	10229	1281	4	0	0	0	0	logfile
✔	7Y8R	33684	2024-12-26	2022-06-24	4.4	5.29	5.72	4.4	0.003	0.54	0.0	0.04	18.47	0.00	1.920	4.56	0.05	5.0	94.9	0.1	-1.79	0.72	0.53	—	4.4	0.003	0.70	0.0	0.04	20.02	0.00	1.115	13.66	0.03	6.6	93.4	0.1	-0.33	1.65	0.83	0.80	—	43109	4407	28	330	174	0	0	logfile
✔	8DG7	27417	2024-12-31	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	18.49	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.70	0.0	0.04	18.53	0.00	1.926	12.18	3.60	6.6	93.3	0.1	-0.56	0.45	0.71	0.71	0.33	15609	1816	7	47	9	0	0	logfile
✔	8DG9	27419	2024-12-31	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	17.36	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.005	0.86	0.0	0.05	16.73	0.00	2.131	4.34	2.74	2.6	97.4	0.0	0.36	1.10	0.69	0.84	4.64	15450	2007	12	0	6	0	0	logfile
✔	8DGA	27420	2024-12-31	2022-06-23	3.73	4.05	3.82	3.9	0.007	1.17	0.0	0.06	14.99	0.01	2.210	8.33	0.12	7.0	92.7	0.3	-2.35	0.70	0.60	0.89	3.9	0.003	0.68	0.0	0.04	16.51	0.00	2.269	13.84	2.24	6.2	93.6	0.3	0.02	0.99	0.70	0.60	0.73	15473	1811	5	41	1	0	0	logfile
✔	8A8M	15233	2024-12-27	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	18.82	0.00	2.218	29.09	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.5	0.004	0.93	0.0	0.05	18.17	0.00	1.895	29.70	3.47	8.3	91.5	0.2	-2.35	0.97	0.83	0.73	—	5244	647	4	0	6	0	0	logfile
✔	8DG5	27416	2024-12-31	2022-06-23	3.26	3.59	3.37	3.5	0.011	1.42	1.0	0.06	16.30	0.01	2.013	8.22	0.00	8.0	91.7	0.3	-2.73	0.69	0.69	1.25	3.5	0.003	0.69	0.0	0.04	17.23	0.00	1.995	10.97	2.03	6.4	93.3	0.2	-0.52	0.39	0.68	0.70	0.52	16269	1887	5	50	12	0	0	logfile
✔	8DG8	27418	2024-12-30	2022-06-23	3.62	3.99	3.58	4.0	0.004	0.72	0.0	0.05	14.02	0.01	2.129	16.01	0.15	8.4	91.6	0.1	-2.83	0.52	0.57	1.57	4.0	0.003	0.74	0.0	0.05	15.95	0.00	2.432	10.35	2.84	7.8	92.0	0.1	-2.22	0.54	0.65	0.67	1.12	11617	1494	8	0	9	0	0	logfile

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