Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DG7	27417	2024-12-31	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	18.49	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.70	0.0	0.04	18.53	0.00	1.926	12.18	3.60	6.6	93.3	0.1	-0.56	0.45	0.71	0.71	0.33	15609	1816	7	47	9	0	0	logfile
✔	8DG5	27416	2024-12-31	2022-06-23	3.26	3.59	3.37	3.5	0.011	1.42	1.0	0.06	16.30	0.01	2.013	8.22	0.00	8.0	91.7	0.3	-2.73	0.69	0.69	1.25	3.5	0.003	0.69	0.0	0.04	17.23	0.00	1.995	10.97	2.03	6.4	93.3	0.2	-0.52	0.39	0.68	0.70	0.52	16269	1887	5	50	12	0	0	logfile
✔	8DGi	27423	2024-12-30	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.75	0.0	0.04	16.49	0.00	2.495	15.02	3.26	5.9	94.0	0.1	-0.41	0.58	0.66	0.50	0.27	13580	1690	2	0	0	0	0	logfile
✘	8DGJ	27427	2024-12-30	2022-06-23	4.02	4.32	4.05	4.1	0.007	1.24	2.0	0.06	14.25	0.01	2.213	11.07	0.13	7.4	92.3	0.3	-2.71	0.69	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13574	1689	2	0	0	0	0	logfile
✘	8A8J	15231	2024-12-27	2022-06-23	3.1	3.35	3.16	3.3	0.005	0.71	0.0	0.04	19.60	0.00	2.009	4.14	0.19	4.4	95.6	0.0	0.13	0.72	0.84	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6159	682	6	38	4	0	0	logfile
✔	7Y89	33682	2024-12-28	2022-06-23	3.02	3.56	3.18	3.4	0.007	0.76	0.0	0.05	14.49	0.00	2.092	11.46	1.29	8.2	91.5	0.4	-1.39	0.69	0.85	2.94	3.4	0.003	0.63	0.0	0.04	16.02	0.00	2.464	5.30	2.47	5.4	94.5	0.1	0.03	0.98	0.65	0.81	1.87	8641	1110	5	0	0	0	0	logfile
✔	7Y81	33677	2024-12-29	2022-06-22	2.54	2.77	2.62	2.8	0.006	0.86	0.0	0.06	20.88	0.01	2.034	7.10	2.91	1.2	98.8	0.0	-1.88	0.65	0.80	3.30	2.8	0.004	0.59	0.0	0.04	20.44	0.01	1.901	12.76	2.53	1.4	98.6	0.0	-0.03	1.14	0.65	0.81	3.83	11044	1223	4	55	5	0	0	logfile
✔	7Y7V	33671	2024-12-27	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.08	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.004	0.62	0.0	0.05	15.66	0.00	2.598	4.80	3.54	2.5	97.5	0.0	1.48	0.35	0.69	0.87	4.05	4341	532	2	0	4	58	0	logfile
✘	7Y80	33676	2024-12-29	2022-06-22	2.71	2.92	2.77	3.0	0.005	0.90	3.0	0.05	20.87	0.01	2.031	8.90	3.77	1.8	98.2	0.0	-1.49	0.59	0.75	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10572	1218	3	35	5	0	0	logfile
✔	7Y7W	33672	2024-12-27	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.20	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	2.7	0.003	0.56	0.0	0.04	16.57	0.00	2.216	3.53	2.90	1.7	98.3	0.0	1.85	1.15	0.70	0.87	3.86	4310	529	2	0	7	48	0	logfile
✘	8A8E	15230	2024-12-29	2022-06-22	2.9	2.76	2.92	2.7	0.005	0.79	0.0	0.05	15.95	0.01	2.353	4.32	2.81	7.0	93.0	0.0	-2.84	0.78	0.83	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56568	7248	24	0	0	0	0	logfile
✔	7Y7i	33666	2024-12-30	2022-06-22	3.42	3.09	3.34	3.3	0.004	0.57	0.0	0.04	28.76	0.00	2.234	8.91	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.3	0.003	0.56	0.0	0.04	28.59	0.00	2.476	7.63	2.04	2.0	98.0	0.0	2.55	0.66	0.67	0.80	2.00	12445	824	12	286	0	0	0	logfile
✔	7Y7Z	33675	2024-12-27	2022-06-22	3.2	3.57	3.17	3.5	0.006	0.71	0.0	0.05	15.33	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.66	0.0	0.05	16.21	0.00	2.602	5.25	1.99	5.5	94.5	0.0	1.23	0.45	0.56	0.79	1.21	4303	532	2	0	5	0	0	logfile
✔	8DFS	27412	2024-12-27	2022-06-22	3.0	3.29	3.13	3.3	0.011	0.90	0.0	0.06	18.70	0.00	1.756	7.27	0.23	3.4	96.6	0.0	0.80	0.61	0.74	3.64	3.3	0.003	0.58	0.0	0.04	17.80	0.00	2.135	3.98	2.10	4.3	95.7	0.0	0.41	1.46	0.68	0.81	3.48	49778	3082	13	48	0	0	24538	logfile
✔	7Y7K	33668	2024-12-27	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.4	0.003	0.78	0.0	0.05	11.04	0.00	2.505	11.19	0.00	6.7	92.8	0.5	-1.80	1.19	0.74	0.68	—	2942	422	3	0	0	0	0	logfile
✔	8DFP	27410	2024-12-31	2022-06-22	3.17	3.73	3.15	3.4	0.008	1.13	0.0	0.07	12.92	0.01	2.429	1.23	0.00	1.5	98.5	0.0	-0.93	0.84	0.79	3.52	3.4	0.004	0.59	0.0	0.04	12.08	0.00	2.446	2.83	0.47	2.3	97.7	0.0	0.30	0.57	0.85	0.82	3.49	16124	1118	10	0	10	0	7703	logfile
✔	8DFM	27408	2024-12-31	2022-06-22	3.45	4.16	3.29	3.6	0.008	1.14	0.0	0.07	12.32	0.01	2.387	1.31	0.00	2.0	98.0	0.0	-0.37	0.88	0.83	3.25	3.6	0.004	0.60	0.0	0.04	11.46	0.00	2.361	3.11	0.60	3.0	97.0	0.0	0.81	1.44	0.88	0.84	3.16	15966	1126	10	0	10	0	7566	logfile
✔	7Y7Y	33674	2024-12-27	2022-06-22	2.4	2.62	2.37	2.6	0.005	0.73	0.0	0.07	16.87	0.00	1.789	6.02	0.45	3.0	97.0	0.0	0.29	0.72	0.87	3.50	2.6	0.003	0.62	0.0	0.04	16.04	0.00	2.185	5.31	2.68	1.3	98.7	0.0	1.45	0.41	0.71	0.88	3.20	4303	527	2	0	7	54	0	logfile
✔	7Y83	33679	2024-12-31	2022-06-22	2.93	3.17	3.05	3.2	0.004	0.57	0.0	0.04	20.60	0.00	1.923	18.19	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.004	0.64	0.0	0.04	20.36	0.00	1.891	14.36	4.66	3.3	96.7	0.0	0.06	0.28	0.63	0.79	2.68	16300	1861	5	59	5	0	0	logfile
✔	7Y82	33678	2024-12-30	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	20.35	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.006	0.62	0.0	0.04	20.34	0.00	1.891	12.81	3.06	2.5	97.5	0.0	0.72	0.32	0.71	0.80	3.01	12278	1341	4	66	5	0	0	logfile

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