Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DFP	27410	2024-12-31	2022-06-22	3.17	3.73	3.15	3.4	0.008	1.13	0.0	0.07	12.92	0.01	2.429	1.23	0.00	1.5	98.5	0.0	-0.93	0.84	0.79	3.52	3.4	0.004	0.59	0.0	0.04	12.08	0.00	2.446	2.83	0.47	2.3	97.7	0.0	0.30	0.57	0.85	0.82	3.49	16124	1118	10	0	10	0	7703	logfile
✔	7Y7Z	33675	2024-12-27	2022-06-22	3.2	3.57	3.17	3.5	0.006	0.71	0.0	0.05	15.33	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.66	0.0	0.05	16.21	0.00	2.602	5.25	1.99	5.5	94.5	0.0	1.23	0.45	0.56	0.79	1.21	4303	532	2	0	5	0	0	logfile
✔	7Y6L	33643	2024-12-27	2022-06-21	3.5	3.06	3.33	3.4	0.004	0.54	0.0	0.04	15.59	0.00	2.198	9.08	0.56	2.2	97.8	0.0	-0.30	0.47	0.76	2.09	3.4	0.005	0.64	0.0	0.05	16.69	0.00	2.542	7.69	6.48	3.6	96.4	0.0	-0.31	0.91	0.61	0.81	2.51	3308	422	4	0	1	0	0	logfile
✔	8DEP	27394	2024-12-27	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	19.70	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.60	0.0	0.03	13.22	0.00	2.582	6.08	2.59	1.3	98.7	0.0	3.09	0.66	0.45	0.77	1.78	3223	398	2	0	4	0	0	logfile
✔	8A7o	15222	2024-12-27	2022-06-21	3.0	3.15	2.97	3.0	0.002	0.55	0.0	0.04	11.28	0.00	2.029	6.71	0.00	2.9	97.1	0.0	-3.59	0.50	0.88	5.55	2.9	0.005	0.69	0.0	0.05	14.58	0.00	2.492	4.59	1.61	7.9	92.1	0.0	-3.61	1.40	0.49	0.91	5.09	4362	528	6	0	0	0	0	logfile
✔	7Y72	33651	2024-12-27	2022-06-21	4.03	4.19	3.96	4.1	0.003	0.66	0.0	0.04	13.27	0.00	2.208	9.42	0.00	8.3	91.6	0.1	-1.99	0.60	0.75	—	4.1	0.003	0.66	0.0	0.04	13.38	0.01	2.342	7.93	0.15	7.7	92.2	0.1	-1.79	2.28	0.59	0.76	—	6163	795	4	0	0	0	0	logfile
✔	7Y6U	33648	2024-12-29	2022-06-21	3.2	4.00	3.27	3.5	0.004	0.69	0.0	0.05	18.86	0.00	2.170	7.45	0.00	5.5	94.2	0.3	-0.28	0.66	0.83	3.27	3.5	0.002	0.62	0.0	0.05	14.47	0.00	2.514	6.12	1.91	4.8	94.8	0.3	-0.42	1.11	0.66	0.84	2.80	9915	1224	13	0	40	0	0	logfile
✔	8DEW	27401	2024-12-27	2022-06-21	2.89	3.11	2.93	3.1	0.005	0.85	1.0	0.04	14.96	0.00	2.160	6.02	0.16	3.2	96.8	0.0	1.58	0.74	0.84	2.90	3.1	0.002	0.51	0.0	0.04	16.39	0.00	2.296	3.57	1.02	2.7	97.3	0.0	2.06	0.59	0.71	0.85	2.67	48792	3172	7	0	23	0	24295	logfile
✔	8DFA	27403	2024-12-27	2022-06-21	2.8	3.02	2.79	3.0	0.037	2.80	322.0	0.32	16.53	0.01	1.474	3.88	1.63	5.3	94.6	0.0	-1.30	0.69	0.65	3.15	3.0	0.004	0.70	0.0	0.06	17.86	0.01	2.275	3.11	1.51	5.2	94.8	0.0	-0.37	1.77	0.80	0.83	2.73	46813	2855	13	64	0	0	23023	logfile
✔	7Y6V	33649	2024-12-29	2022-06-21	3.3	4.21	3.47	3.6	0.004	0.74	0.0	0.06	17.91	0.00	2.149	10.16	0.00	5.7	94.0	0.2	-0.46	0.64	0.82	2.69	3.6	0.002	0.65	0.0	0.05	14.35	0.00	2.419	7.15	1.24	5.6	94.1	0.2	-0.54	0.35	0.64	0.83	2.56	9988	1224	16	0	45	0	0	logfile
✔	8DEX	27402	2024-12-27	2022-06-21	2.7	2.85	2.68	2.9	0.012	0.95	1.0	0.06	18.60	0.01	1.790	4.35	0.96	3.2	96.8	0.0	0.67	0.46	0.61	4.27	2.9	0.003	0.59	0.0	0.04	18.07	0.00	2.254	2.57	2.01	3.3	96.7	0.0	0.51	1.11	0.67	0.81	4.17	46307	2857	12	48	0	0	22829	logfile
✔	7Y6N	33644	2024-12-27	2022-06-21	4.4	3.58	4.16	4.0	0.003	0.84	0.0	0.05	12.98	0.01	2.222	15.34	0.00	12.1	87.9	0.0	-2.77	0.46	0.56	—	3.6	0.003	0.82	0.0	0.05	13.93	0.01	2.559	11.35	0.00	11.7	88.3	0.0	-2.61	1.14	0.52	0.62	—	3327	426	4	0	1	0	0	logfile
✔	8A7Q	15224	2024-12-27	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.17	0.0	0.05	16.35	0.00	2.504	13.47	2.46	7.9	92.1	0.0	-4.89	4.62	0.41	0.75	3.27	6492	768	12	0	0	0	0	logfile
✔	8A7P	15223	2024-12-27	2022-06-21	3.4	3.32	3.49	3.5	0.002	0.54	0.0	0.04	10.48	0.01	2.313	6.43	1.83	4.7	95.3	0.0	-3.55	0.44	0.77	3.05	3.5	0.004	0.75	0.0	0.05	14.99	0.00	2.505	6.91	2.85	8.4	91.6	0.0	-3.84	0.78	0.45	0.80	3.08	4320	522	6	0	0	0	0	logfile
✔	8A7T	15225	2024-12-27	2022-06-21	3.0	2.93	3.07	3.2	0.003	0.46	0.0	0.04	8.48	0.00	2.026	5.04	0.00	2.8	97.2	0.0	-4.48	0.39	0.85	4.72	3.2	0.004	0.66	0.0	0.04	15.89	0.00	2.425	6.43	3.10	2.5	97.5	0.0	-3.93	0.80	0.42	0.88	4.03	3702	444	6	0	0	0	0	logfile
✔	8DE6	27385	2024-12-30	2022-06-20	3.2	3.41	3.23	3.4	0.010	0.93	0.0	0.06	14.68	0.01	2.169	4.54	2.53	4.0	96.0	0.0	-0.86	0.70	0.82	3.02	3.4	0.005	0.62	0.0	0.04	14.56	0.00	2.199	3.23	3.21	4.3	95.7	0.0	-1.08	0.56	0.72	0.85	2.96	13243	1659	10	0	12	0	0	logfile
✔	8A7D	15220	2024-12-29	2022-06-20	3.06	3.45	3.18	3.4	0.004	0.76	0.0	0.05	14.79	0.01	2.115	7.59	0.50	5.3	94.2	0.5	-0.22	0.64	0.77	2.66	3.4	0.004	0.65	0.0	0.05	15.84	0.00	2.212	6.16	2.94	5.0	94.8	0.2	0.11	0.50	0.60	0.75	2.40	10771	1361	5	0	17	0	0	logfile
✔	7Y6K	33642	2024-12-27	2022-06-20	3.34	3.42	3.31	3.4	0.004	0.65	0.0	0.04	14.23	0.01	2.222	15.89	0.57	4.9	95.1	0.0	-1.02	0.70	0.79	2.98	3.4	0.003	0.60	0.0	0.04	15.48	0.00	2.394	10.84	3.00	3.7	96.3	0.0	-0.61	1.83	0.70	0.81	2.82	6363	834	5	0	1	0	0	logfile
✔	8DE9	27388	2024-12-27	2022-06-20	3.4	4.08	3.48	3.9	0.005	1.12	0.0	0.06	14.38	0.01	2.309	8.02	0.23	3.3	96.7	0.0	2.27	0.60	0.77	1.86	3.9	0.004	0.99	0.0	0.05	17.10	0.00	2.455	14.00	1.60	4.1	95.9	0.0	1.90	2.06	0.55	0.76	1.71	4115	517	3	0	4	0	0	logfile
✔	8DE7	27386	2024-12-27	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.05	0.0	0.06	16.51	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.004	1.01	0.0	0.05	17.00	0.01	2.479	15.13	3.60	2.5	97.5	0.0	2.19	0.93	0.56	0.75	1.09	4168	526	4	0	4	0	0	logfile

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