Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RC3	19046	2025-05-20	2023-12-05	3.0	2.42	3.04	3.1	0.004	0.57	0.0	0.04	18.29	0.00	2.075	10.06	0.00	2.2	97.8	0.0	0.49	0.86	0.86	3.39	3.1	0.005	0.79	1.0	0.04	19.12	0.00	2.290	8.71	1.41	2.6	97.4	0.0	0.33	0.32	0.86	0.86	3.14	19893	2297	12	112	1	0	0	logfile
✔	8RC2	19045	2025-05-20	2023-12-05	3.1	3.51	3.00	3.3	0.006	0.62	0.0	0.04	17.11	0.01	2.046	7.49	0.42	1.3	98.7	0.0	0.85	0.73	0.82	3.99	3.4	0.003	0.61	0.0	0.04	18.27	0.00	2.498	6.55	1.26	1.3	98.7	0.0	1.39	1.20	0.79	0.87	3.56	19755	2304	12	94	1	0	0	logfile
✔	8XAU	38203	2025-05-25	2023-12-05	3.14	3.38	3.22	3.4	0.005	0.81	0.0	0.05	16.89	0.01	2.220	7.93	0.43	3.7	96.3	0.0	-2.40	0.74	0.82	2.14	3.4	0.003	0.60	0.0	0.04	17.11	0.00	2.458	10.65	3.70	3.2	96.7	0.2	-0.46	0.36	0.74	0.84	2.22	26640	3331	6	0	0	0	0	logfile
✔	8XB4	38210	2025-05-10	2023-12-05	2.92	3.16	2.96	3.2	0.005	0.61	0.0	0.04	14.47	0.00	2.258	7.33	0.00	1.9	98.1	0.0	-1.88	0.61	0.81	3.82	3.2	0.003	0.56	0.0	0.04	14.69	0.00	2.559	5.94	1.55	1.9	98.1	0.0	1.29	1.15	0.59	0.81	3.25	4307	536	2	0	1	0	0	logfile
✔	8V89	43031	2025-05-30	2023-12-05	2.53	2.23	2.63	2.3	0.008	1.00	0.0	0.06	15.42	0.01	2.287	4.68	0.56	4.1	95.9	0.0	-1.75	0.63	0.80	5.26	2.3	0.004	0.66	0.0	0.04	15.57	0.01	2.370	6.25	1.06	2.5	97.5	0.0	1.28	0.45	0.65	0.83	4.98	32725	1970	25	0	40	70	15855	logfile
✔	8XAN	38202	2025-05-10	2023-12-05	3.5	3.12	3.40	3.4	0.011	1.19	0.0	0.08	14.66	0.02	2.299	9.73	1.56	4.5	95.5	0.0	-2.22	0.57	0.76	2.31	3.3	0.002	0.61	0.0	0.04	16.32	0.00	2.606	4.18	1.82	2.3	97.7	0.0	-1.26	1.54	0.60	0.82	2.18	6963	918	3	0	0	0	0	logfile
✔	8XAJ	38200	2025-05-14	2023-12-04	3.29	3.52	4.40	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.005	0.97	1.0	0.05	17.47	0.01	1.890	13.16	1.93	10.0	90.0	0.0	0.11	1.12	0.65	0.75	1.65	11668	1410	3	0	7	0	0	logfile
✔	8RBM	19032	2025-05-13	2023-12-04	3.24	3.96	3.31	3.8	0.006	1.01	0.0	0.23	18.91	0.00	2.218	6.53	2.06	3.2	96.5	0.3	0.31	0.76	0.83	2.56	3.8	0.004	0.90	0.0	0.04	13.75	0.00	2.438	6.83	1.88	5.2	94.5	0.2	1.26	0.51	0.75	0.89	2.21	11259	1425	12	0	20	0	0	logfile
✔	8RBF	19030	2025-05-16	2023-12-04	4.2	2.69	4.03	3.2	0.013	1.69	1.0	0.10	15.61	0.01	1.342	9.73	0.19	3.5	96.4	0.1	-1.94	0.66	0.68	—	1.7	0.003	0.78	0.0	0.05	14.24	0.00	1.836	10.24	0.00	3.3	96.7	0.0	0.38	2.38	0.69	0.73	—	14790	1848	8	0	9	0	0	logfile
✔	8RBG	19031	2025-05-10	2023-12-04	4.9	5.29	4.97	5.0	0.013	1.92	5.0	0.11	12.43	0.02	1.819	10.03	0.62	2.7	97.0	0.3	0.61	0.78	0.66	—	5.0	0.003	0.69	0.0	0.04	13.84	0.00	1.988	14.63	0.00	3.0	97.0	0.0	0.72	1.28	0.83	0.80	—	6008	737	2	0	3	0	0	logfile
✔	8V85	43023	2025-05-09	2023-12-04	2.9	5.78	4.24	20.0	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.6	0.004	0.93	0.0	0.04	13.66	0.00	2.424	28.18	0.58	5.6	94.4	0.0	-0.43	4.16	0.35	0.28	0.83	1539	197	1	0	0	0	0	logfile
✔	8V81	43014	2025-05-12	2023-12-04	3.6	2.82	3.58	3.6	0.003	0.53	0.0	0.04	19.32	0.00	1.993	6.01	0.50	3.7	96.3	0.0	-0.73	0.63	0.79	1.20	3.6	0.004	0.86	0.0	0.04	19.06	0.00	1.999	4.94	6.64	2.8	97.2	0.0	-0.27	0.28	0.64	0.79	1.07	9258	1132	2	0	11	0	0	logfile
✔	8V7L	43003	2025-05-24	2023-12-04	2.9	3.39	2.93	3.1	0.010	1.36	0.0	0.08	21.51	0.01	2.316	1.99	2.32	3.6	96.2	0.3	-1.48	0.76	0.57	3.23	3.1	0.004	0.58	0.0	0.03	25.42	0.00	1.846	11.54	0.68	4.3	95.6	0.1	1.35	1.56	0.86	0.80	2.59	25545	1203	12	280	2	0	10096	logfile
✔	8V7Z	43011	2025-05-12	2023-12-04	3.4	2.66	3.43	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.004	0.61	0.0	0.04	19.18	0.00	1.939	9.80	5.87	5.4	94.5	0.1	-0.08	0.23	0.50	0.72	1.83	8977	1104	2	0	10	0	0	logfile
✔	8RBQ	19034	2025-05-14	2023-12-04	3.32	4.02	3.36	3.8	0.008	1.58	4.0	0.20	19.37	0.01	2.242	6.92	0.65	5.4	94.1	0.5	-1.53	0.76	0.81	1.88	3.8	0.011	1.19	0.0	0.04	15.66	0.00	2.490	6.51	3.18	6.2	93.6	0.2	0.96	0.55	0.76	0.88	1.85	12140	1561	13	0	17	0	0	logfile
✔	8RBo	19033	2025-05-24	2023-12-04	3.02	4.07	3.43	3.8	0.003	0.59	0.0	0.04	17.24	0.00	2.081	9.33	0.07	2.2	97.8	0.0	0.49	0.60	0.44	0.47	3.8	0.004	0.77	0.0	0.05	17.78	0.01	2.082	11.92	2.07	3.0	97.0	0.0	0.35	1.37	0.87	0.83	1.83	26368	3290	15	0	6	0	0	logfile
✔	8RB9	19029	2025-05-15	2023-12-03	3.19	3.83	3.26	3.6	0.007	1.16	0.0	0.22	20.16	0.00	2.148	5.77	1.99	5.0	94.9	0.1	0.54	0.79	0.85	2.38	3.6	0.003	0.96	0.0	0.04	13.82	0.00	2.439	5.54	1.75	4.7	95.3	0.1	1.51	1.31	0.77	0.90	2.05	12743	1605	13	0	26	0	0	logfile
✔	8RB7	19027	2025-05-10	2023-12-03	3.2	3.80	2.40	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.59	0.0	0.04	17.80	0.01	2.498	8.55	1.28	2.2	97.8	0.0	1.73	2.07	0.28	0.76	1.59	5848	360	2	0	0	0	2948	logfile
✘	8V6U	42999	2025-05-11	2023-12-03	3.0	2.35	—	3.0	0.011	1.67	3.0	0.09	14.06	0.01	1.999	1.24	1.31	4.1	95.8	0.1	0.40	0.83	0.79	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8211	1090	6	0	1	0	0	logfile
✔	8RB8	19028	2025-05-14	2023-12-03	3.41	4.14	3.49	3.8	0.006	1.10	0.0	0.22	18.68	0.00	2.169	5.23	1.51	4.5	95.3	0.2	0.92	0.77	0.84	1.81	3.8	0.002	0.88	0.0	0.04	13.26	0.00	2.520	5.93	1.59	4.2	95.8	0.1	1.78	0.59	0.77	0.89	1.67	12585	1605	13	0	22	0	0	logfile

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