Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8V6U	42999	2025-05-11	2023-12-03	3.0	2.35	—	3.0	0.011	1.67	3.0	0.09	14.06	0.01	1.999	1.24	1.31	4.1	95.8	0.1	0.40	0.83	0.79	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8211	1090	6	0	1	0	0	logfile
✔	8RB4	19025	2025-05-16	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.003	0.61	0.0	0.04	17.17	0.00	2.365	7.39	1.79	2.5	97.3	0.2	1.55	2.23	0.48	0.79	1.47	14620	900	5	0	0	0	7370	logfile
✔	8V64	42989	2025-05-29	2023-12-01	2.6	3.39	2.71	3.1	0.004	0.65	0.0	0.05	23.55	0.00	2.210	2.90	0.00	1.6	98.4	0.0	0.66	0.72	0.84	4.40	3.0	0.002	0.52	0.0	0.04	11.99	0.00	2.557	3.40	0.22	1.7	98.3	0.0	1.43	0.47	0.72	0.84	4.00	31541	3640	12	0	73	4	0	logfile
✔	8V63	42988	2025-05-29	2023-12-01	2.72	3.42	2.87	3.2	0.005	0.67	0.0	0.05	24.13	0.00	2.221	4.07	0.03	1.7	98.3	0.0	0.34	0.70	0.79	3.77	3.2	0.002	0.49	0.0	0.04	12.10	0.00	2.422	3.35	0.28	1.3	98.7	0.0	1.87	0.38	0.70	0.80	3.08	31665	3624	12	0	81	8	0	logfile
✔	8V60	42986	2025-05-29	2023-12-01	2.43	2.84	2.57	2.7	0.005	0.68	0.0	0.05	23.40	0.00	2.183	3.65	0.00	1.7	98.3	0.0	0.50	0.72	0.84	3.67	2.7	0.002	0.52	0.0	0.04	13.47	0.00	2.434	3.46	1.16	1.6	98.4	0.0	1.58	0.49	0.72	0.84	3.71	31464	3624	12	0	77	20	0	logfile
✔	8V5V	42985	2025-05-17	2023-12-01	2.93	4.04	2.95	3.2	0.002	0.50	0.0	0.04	12.05	0.00	2.276	4.75	0.00	1.7	98.3	0.0	1.22	0.86	0.85	1.75	3.2	0.005	0.65	0.0	0.04	14.21	0.00	2.508	7.69	0.58	2.7	97.3	0.0	0.68	2.02	0.87	0.88	2.71	15882	2025	15	0	21	0	0	logfile
✔	8V6L	42995	2025-05-21	2023-12-01	3.68	3.99	3.85	3.9	0.004	0.63	0.0	0.04	16.49	0.00	2.001	8.76	5.12	13.4	86.6	0.0	-1.18	0.68	0.82	2.42	4.0	0.003	0.77	0.0	0.04	17.96	0.00	2.361	8.92	4.65	12.1	87.9	0.0	-0.89	4.77	0.71	0.83	1.23	22387	2612	8	0	27	0	0	logfile
✔	8V62	42987	2025-05-17	2023-12-01	3.4	2.29	3.50	2.1	0.002	0.56	0.0	0.04	10.43	0.01	2.032	2.06	0.00	0.9	99.1	0.0	0.61	0.75	0.77	3.19	2.1	0.002	0.58	0.0	0.04	14.46	0.00	2.480	4.45	1.83	1.2	98.8	0.0	0.72	0.46	0.76	0.78	2.72	15234	1980	9	0	0	0	0	logfile
✔	8V6o	42998	2025-05-22	2023-12-01	2.83	3.17	2.98	3.2	0.009	1.36	0.0	0.04	20.28	0.01	2.290	4.32	0.35	5.5	94.5	0.0	-6.54	0.61	0.74	3.73	3.1	0.003	0.67	0.0	0.04	18.89	0.00	2.338	7.47	1.59	5.4	94.6	0.0	0.71	1.11	0.67	0.87	3.27	22683	2560	12	0	43	44	0	logfile
✔	8X9S	38183	2025-05-10	2023-12-01	3.49	4.10	3.36	3.8	0.003	0.57	0.0	0.04	18.16	0.00	2.260	7.81	0.57	6.6	93.4	0.0	-0.16	0.75	0.86	1.18	3.8	0.002	0.55	0.0	0.04	18.02	0.00	2.553	6.46	3.13	6.0	94.0	0.0	0.01	0.28	0.75	0.86	0.99	6774	892	5	0	1	0	0	logfile
✔	8V6N	42997	2025-05-21	2023-12-01	2.59	2.81	2.72	2.9	0.008	1.22	0.0	0.05	16.90	0.01	2.274	3.79	0.00	5.6	94.4	0.0	-6.02	0.59	0.78	3.84	2.9	0.004	0.68	0.0	0.04	17.63	0.00	2.320	5.60	2.56	5.8	94.2	0.0	0.46	1.12	0.65	0.87	3.56	22185	2544	12	0	33	184	0	logfile
✔	8V5K	42983	2025-05-19	2023-11-30	2.6	2.12	2.76	1.9	0.007	0.75	0.0	0.05	11.79	0.01	2.217	3.64	0.00	1.2	98.8	0.0	0.72	0.79	0.79	4.83	1.9	0.004	0.66	0.0	0.05	15.23	0.00	2.326	5.69	1.95	1.4	98.6	0.0	1.45	0.41	0.80	0.82	3.59	15336	1980	12	0	3	0	0	logfile
✔	8R9W	19014	2025-05-25	2023-11-30	3.1	3.61	2.99	3.3	0.004	0.59	0.0	0.04	16.82	0.00	1.198	5.04	0.72	5.0	95.0	0.0	0.20	0.85	0.86	2.73	3.3	0.003	0.54	0.0	0.04	15.10	0.00	2.562	4.68	2.17	4.7	95.3	0.0	0.53	0.41	0.85	0.87	2.92	26331	3540	27	0	75	0	0	logfile
✔	8V54	42979	2025-05-17	2023-11-30	4.1	2.60	3.84	1.7	0.003	0.48	0.0	0.04	13.24	0.00	2.178	9.69	0.81	4.4	95.6	0.0	0.98	0.75	0.74	—	1.9	0.003	0.59	0.0	0.04	14.37	0.00	2.475	8.10	0.13	3.5	96.5	0.0	1.28	1.08	0.73	0.72	—	15728	1787	5	46	0	0	0	logfile
✔	8V5A	42981	2025-05-17	2023-11-30	3.0	2.17	3.05	2.0	0.009	1.05	0.0	0.06	13.03	0.01	2.032	6.89	0.00	3.7	96.3	0.0	-0.64	0.78	0.74	3.21	2.0	0.003	0.67	0.0	0.04	16.10	0.00	2.474	7.31	2.18	2.1	97.9	0.0	0.00	0.94	0.77	0.79	2.51	13056	1701	6	0	0	0	0	logfile
✔	8R9V	19013	2025-05-17	2023-11-30	4.4	2.81	4.31	3.9	0.013	1.69	1.0	0.10	14.89	0.01	1.324	17.12	0.25	4.3	95.3	0.3	-2.00	0.64	0.65	—	1.8	0.003	0.81	0.0	0.05	14.11	0.00	1.852	12.71	0.00	3.2	96.7	0.1	-0.01	1.24	0.68	0.72	—	14851	1857	8	0	10	0	0	logfile
✔	8V5D	42982	2025-05-10	2023-11-30	3.0	3.76	3.04	3.6	0.003	0.52	0.0	0.04	9.90	0.00	2.219	12.09	1.84	4.1	95.9	0.0	0.80	0.69	0.61	1.04	3.6	0.004	0.90	0.0	0.05	15.04	0.01	2.486	17.98	2.70	5.7	94.1	0.1	-0.39	2.09	0.68	0.62	0.91	6694	851	1	0	0	0	0	logfile
✔	8X9P	38178	2025-05-11	2023-11-30	3.54	3.88	3.61	3.8	0.004	0.67	0.0	0.04	16.06	0.00	2.145	17.35	0.12	3.1	96.9	0.0	0.51	0.80	0.77	1.64	3.7	0.003	0.73	0.0	0.04	17.22	0.00	2.510	13.45	3.11	2.8	97.2	0.0	0.22	1.08	0.80	0.79	1.22	7669	973	3	0	0	0	0	logfile
✔	8R8V	19012	2025-05-13	2023-11-30	3.6	3.76	3.66	3.7	0.005	0.72	0.0	0.05	15.81	0.01	2.238	7.68	0.61	3.6	96.4	0.0	-0.34	0.73	0.80	2.37	3.7	0.004	0.64	0.0	0.05	16.51	0.00	2.209	6.55	3.39	4.1	95.9	0.0	0.53	1.06	0.71	0.81	2.50	10202	1292	8	0	12	0	0	logfile
✘	8V5R	42984	2025-05-17	2023-11-30	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15338	1743	6	43	1	0	0	logfile

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