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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8R9W | 19014 | 2025-05-25 | 2023-11-30 | 3.1 | 3.61 | 2.99 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 16.82 | 0.00 | 1.198 | 5.04 | 0.72 | 5.0 | 95.0 | 0.0 | 0.20 | 0.85 | 0.86 | 2.73 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 15.10 | 0.00 | 2.562 | 4.68 | 2.17 | 4.7 | 95.3 | 0.0 | 0.53 | 0.41 | 0.85 | 0.87 | 2.92 | 26331 | 3540 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 8V5K | 42983 | 2025-05-19 | 2023-11-30 | 2.6 | 2.12 | 2.76 | 1.9 | 0.007 | 0.75 | 0.0 | 0.05 | 11.79 | 0.01 | 2.217 | 3.64 | 0.00 | 1.2 | 98.8 | 0.0 | 0.72 | 0.79 | 0.79 | 4.83 | 1.9 | 0.004 | 0.66 | 0.0 | 0.05 | 15.23 | 0.00 | 2.326 | 5.69 | 1.95 | 1.4 | 98.6 | 0.0 | 1.45 | 0.41 | 0.80 | 0.82 | 3.59 | 15336 | 1980 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 8R9Y | 19016 | 2025-05-11 | 2023-11-30 | 3.0 | 3.63 | 3.03 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.255 | 6.05 | 0.00 | 5.1 | 94.9 | 0.0 | 0.13 | 0.84 | 0.83 | 3.66 | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 15.70 | 0.00 | 2.475 | 8.22 | 2.63 | 5.9 | 94.1 | 0.0 | 0.11 | 2.03 | 0.86 | 0.85 | 3.52 | 7446 | 972 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8V5A | 42981 | 2025-05-17 | 2023-11-30 | 3.0 | 2.17 | 3.05 | 2.0 | 0.009 | 1.05 | 0.0 | 0.06 | 13.03 | 0.01 | 2.032 | 6.89 | 0.00 | 3.7 | 96.3 | 0.0 | -0.64 | 0.78 | 0.74 | 3.21 | 2.0 | 0.003 | 0.67 | 0.0 | 0.04 | 16.10 | 0.00 | 2.474 | 7.31 | 2.18 | 2.1 | 97.9 | 0.0 | 0.00 | 0.94 | 0.77 | 0.79 | 2.51 | 13056 | 1701 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8R8U | 19011 | 2025-05-13 | 2023-11-30 | 3.1 | 3.24 | 3.12 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 16.32 | 0.00 | 1.792 | 4.52 | 0.00 | 2.4 | 97.6 | 0.0 | 0.37 | 0.75 | 0.86 | 3.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1280 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8X9L | 38174 | 2025-05-17 | 2023-11-30 | 3.04 | 3.27 | 3.11 | 1.7 | 0.007 | 0.86 | 0.0 | 0.04 | 26.47 | 0.01 | 2.146 | 5.22 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.91 | — | 1.7 | 0.006 | 0.76 | 0.0 | 0.04 | 26.21 | 0.01 | 1.913 | 10.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.22 | 0.94 | 0.91 | — | 15808 | 0 | 2 | 733 | 29 | 6 | 0 | logfile |
✔ | 8X9o | 38177 | 2025-05-17 | 2023-11-30 | 3.06 | 3.27 | 3.11 | 1.6 | 0.007 | 0.93 | 0.0 | 0.05 | 26.32 | 0.01 | 2.168 | 7.27 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.90 | — | 1.6 | 0.007 | 0.82 | 0.0 | 0.04 | 26.09 | 0.01 | 2.020 | 14.34 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.36 | 0.95 | 0.91 | — | 16201 | 0 | 2 | 751 | 33 | 8 | 0 | logfile |
✔ | 8X9Q | 38182 | 2025-05-17 | 2023-11-30 | 3.04 | 2.63 | 3.12 | 3.0 | 0.007 | 0.99 | 0.0 | 0.09 | 26.59 | 0.00 | 1.676 | 8.66 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.77 | 0.81 | — | 2.9 | 0.008 | 0.74 | 0.0 | 0.04 | 25.80 | 0.01 | 1.712 | 12.44 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.78 | 0.83 | — | 15688 | 0 | 2 | 727 | 29 | 10 | 0 | logfile |
✔ | 8R8K | 19002 | 2025-05-09 | 2023-11-29 | 3.41 | 3.66 | 3.36 | 3.7 | 0.003 | 0.49 | 0.0 | 0.04 | 15.09 | 0.00 | 2.145 | 4.83 | 0.23 | 2.6 | 97.4 | 0.0 | -0.18 | 0.58 | 0.84 | 2.55 | 3.7 | 0.003 | 0.50 | 0.0 | 0.04 | 15.48 | 0.00 | 2.593 | 4.44 | 2.73 | 4.5 | 95.5 | 0.0 | -0.18 | 0.28 | 0.59 | 0.85 | 2.55 | 4005 | 515 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8V4M | 42973 | 2025-05-18 | 2023-11-29 | 3.0 | 2.51 | — | 3.0 | 0.006 | 1.03 | 0.0 | 0.06 | 14.32 | 0.01 | 2.137 | 2.68 | 0.00 | 2.7 | 97.3 | 0.0 | -1.91 | 0.65 | 0.79 | 2.78 | 2.0 | 0.004 | 0.73 | 0.0 | 0.05 | 17.21 | 0.01 | 1.835 | 8.85 | 1.91 | 2.7 | 97.3 | 0.0 | 0.44 | 1.50 | 0.72 | 0.85 | 3.18 | 17431 | 2227 | 11 | 0 | 13 | 0 | 0 | logfile |
✔ | 8R8D | 18999 | 2025-05-11 | 2023-11-29 | 2.6 | 2.88 | 2.59 | 2.9 | 0.003 | 0.68 | 0.0 | 0.05 | 14.75 | 0.01 | 2.232 | 7.33 | 0.00 | 4.3 | 95.7 | 0.0 | 0.10 | 0.70 | 0.81 | 2.80 | 2.9 | 0.006 | 1.32 | 2.0 | 0.05 | 15.02 | 0.01 | 1.601 | 8.63 | 2.07 | 5.0 | 95.0 | 0.0 | 0.08 | 0.31 | 0.67 | 0.82 | 3.40 | 7062 | 920 | 14 | 0 | 12 | 18 | 0 | logfile |
✔ | 8V4K | 42971 | 2025-05-19 | 2023-11-29 | 3.1 | 2.75 | — | 2.9 | 0.006 | 1.03 | 0.0 | 0.06 | 14.27 | 0.01 | 1.719 | 2.27 | 0.05 | 2.4 | 97.6 | 0.0 | -1.97 | 0.71 | 0.83 | 2.97 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 16.08 | 0.00 | 1.834 | 5.86 | 1.23 | 2.1 | 97.9 | 0.0 | 0.73 | 0.69 | 0.76 | 0.88 | 3.02 | 17559 | 2229 | 10 | 0 | 17 | 0 | 0 | logfile |
✔ | 8X9B | 38171 | 2025-05-22 | 2023-11-29 | 3.82 | 4.04 | 3.77 | 4.0 | 0.012 | 1.57 | 0.0 | 0.10 | 12.25 | 0.01 | 2.173 | 2.03 | 0.00 | 2.4 | 97.6 | 0.0 | -3.01 | 0.62 | 0.79 | 2.41 | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 16.01 | 0.00 | 2.209 | 6.37 | 3.54 | 3.6 | 96.4 | 0.0 | -1.16 | 1.34 | 0.66 | 0.84 | 2.26 | 22600 | 2898 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8R8Q | 19006 | 2025-05-10 | 2023-11-29 | 4.08 | 4.33 | 4.00 | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 13.96 | 0.00 | 2.210 | 7.88 | 0.17 | 7.9 | 92.1 | 0.0 | -1.26 | 0.66 | 0.79 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 13.73 | 0.00 | 2.382 | 6.83 | 0.00 | 7.8 | 92.1 | 0.1 | -0.79 | 0.41 | 0.66 | 0.79 | — | 5702 | 732 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 8R8R | 19008 | 2025-05-15 | 2023-11-29 | 2.79 | 3.75 | 2.73 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 13.00 | 0.00 | 2.275 | 2.10 | 0.00 | 3.3 | 96.7 | 0.0 | -0.27 | 0.89 | 0.88 | 5.08 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.01 | 0.00 | 2.485 | 2.41 | 0.15 | 3.1 | 96.9 | 0.0 | 0.06 | 0.90 | 0.89 | 0.92 | 4.65 | 13089 | 1683 | 6 | 6 | 3 | 0 | 0 | logfile |
✔ | 8V4Q | 42975 | 2025-05-10 | 2023-11-29 | 2.71 | 2.89 | 2.70 | 2.9 | 0.003 | 0.53 | 0.0 | 0.05 | 13.53 | 0.00 | 2.201 | 1.68 | 0.48 | 1.7 | 98.3 | 0.0 | 0.26 | 0.55 | 0.85 | 3.48 | 2.9 | 0.003 | 0.51 | 0.0 | 0.04 | 16.86 | 0.00 | 2.486 | 1.01 | 2.25 | 1.9 | 98.1 | 0.0 | 0.36 | 0.93 | 0.58 | 0.89 | 3.19 | 5993 | 761 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8V4L | 42972 | 2025-05-18 | 2023-11-29 | 2.9 | 2.46 | — | 2.0 | 0.006 | 1.05 | 0.0 | 0.06 | 14.22 | 0.01 | 2.140 | 2.32 | 0.05 | 2.4 | 97.6 | 0.0 | -1.75 | 0.65 | 0.79 | 3.24 | 2.1 | 0.004 | 0.67 | 0.0 | 0.04 | 17.19 | 0.00 | 1.841 | 8.30 | 2.66 | 2.6 | 97.4 | 0.0 | 0.57 | 1.86 | 0.73 | 0.85 | 3.19 | 17463 | 2230 | 11 | 0 | 13 | 0 | 0 | logfile |
✘ | 8R8T | 19009 | 2025-05-09 | 2023-11-29 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3256 | 418 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8V4Y | 42977 | 2025-05-27 | 2023-11-29 | 2.8 | 3.26 | 2.84 | 3.0 | 0.011 | 1.33 | 0.0 | 0.08 | 20.03 | 0.01 | 1.852 | 1.67 | 0.67 | 3.7 | 96.2 | 0.2 | -1.09 | 0.81 | 0.68 | 4.37 | 3.0 | 0.006 | 0.65 | 0.0 | 0.05 | 24.09 | 0.00 | 1.890 | 2.24 | 0.76 | 4.4 | 95.4 | 0.2 | 1.47 | 1.51 | 0.89 | 0.88 | 3.38 | 29426 | 1219 | 12 | 294 | 3 | 0 | 13550 | logfile |
✔ | 8V4N | 42974 | 2025-05-09 | 2023-11-29 | 2.43 | 2.63 | 2.50 | 2.6 | 0.002 | 0.49 | 0.0 | 0.04 | 14.21 | 0.00 | 2.260 | 4.14 | 0.93 | 2.3 | 97.7 | 0.0 | 0.80 | 0.31 | 0.85 | 3.24 | 2.6 | 0.002 | 0.54 | 0.0 | 0.04 | 17.77 | 0.00 | 2.652 | 1.71 | 2.80 | 1.9 | 98.1 | 0.0 | 0.88 | 0.99 | 0.31 | 0.87 | 3.51 | 2067 | 263 | 1 | 0 | 0 | 0 | 0 | logfile |