Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V5D	42982	2025-05-10	2023-11-30	3.0	3.76	3.04	3.6	0.003	0.52	0.0	0.04	9.90	0.00	2.219	12.09	1.84	4.1	95.9	0.0	0.80	0.69	0.61	1.04	3.6	0.004	0.90	0.0	0.05	15.04	0.01	2.486	17.98	2.70	5.7	94.1	0.1	-0.39	2.09	0.68	0.62	0.91	6694	851	1	0	0	0	0	logfile
✔	8X9Q	38182	2025-05-17	2023-11-30	3.04	2.63	3.12	3.0	0.007	0.99	0.0	0.09	26.59	0.00	1.676	8.66	0.00	0.0	0.0	0.0	—	0.77	0.81	—	2.9	0.008	0.74	0.0	0.04	25.80	0.01	1.712	12.44	0.00	0.0	0.0	0.0	—	0.93	0.78	0.83	—	15688	0	2	727	29	10	0	logfile
✔	8X9N	38176	2025-05-17	2023-11-30	3.01	3.23	3.07	1.6	0.007	0.91	0.0	0.05	26.96	0.01	1.929	5.20	0.00	0.0	0.0	0.0	—	0.94	0.91	—	1.6	0.008	0.83	0.0	0.04	26.71	0.01	1.755	11.29	0.00	0.0	0.0	0.0	—	0.22	0.95	0.92	—	15744	0	2	730	28	8	0	logfile
✘	8R8U	19011	2025-05-13	2023-11-30	3.1	3.24	3.12	3.2	0.002	0.48	0.0	0.04	16.32	0.00	1.792	4.52	0.00	2.4	97.6	0.0	0.37	0.75	0.86	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1280	6	0	12	0	0	logfile
✔	8X9L	38174	2025-05-17	2023-11-30	3.04	3.27	3.11	1.7	0.007	0.86	0.0	0.04	26.47	0.01	2.146	5.22	0.00	0.0	0.0	0.0	—	0.94	0.91	—	1.7	0.006	0.76	0.0	0.04	26.21	0.01	1.913	10.78	0.00	0.0	0.0	0.0	—	0.22	0.94	0.91	—	15808	0	2	733	29	6	0	logfile
✔	8R9V	19013	2025-05-17	2023-11-30	4.4	2.81	4.31	3.9	0.013	1.69	1.0	0.10	14.89	0.01	1.324	17.12	0.25	4.3	95.3	0.3	-2.00	0.64	0.65	—	1.8	0.003	0.81	0.0	0.05	14.11	0.00	1.852	12.71	0.00	3.2	96.7	0.1	-0.01	1.24	0.68	0.72	—	14851	1857	8	0	10	0	0	logfile
✔	8X9o	38177	2025-05-17	2023-11-30	3.06	3.27	3.11	1.6	0.007	0.93	0.0	0.05	26.32	0.01	2.168	7.27	0.00	0.0	0.0	0.0	—	0.94	0.90	—	1.6	0.007	0.82	0.0	0.04	26.09	0.01	2.020	14.34	0.00	0.0	0.0	0.0	—	0.36	0.95	0.91	—	16201	0	2	751	33	8	0	logfile
✔	8R9Z	19017	2025-05-11	2023-11-30	2.9	3.45	2.86	3.3	0.003	0.57	0.0	0.04	13.35	0.00	2.272	5.23	0.00	5.6	94.4	0.0	0.16	0.88	0.87	4.35	3.3	0.004	0.67	0.0	0.05	15.18	0.00	2.497	6.32	1.92	4.4	95.6	0.0	0.40	1.10	0.86	0.86	3.92	7441	972	7	0	3	0	0	logfile
✔	8V4F	42970	2025-05-09	2023-11-29	2.68	2.21	2.76	2.1	0.005	0.99	0.0	0.06	13.78	0.01	2.360	4.27	0.00	4.0	96.0	0.0	-0.42	0.76	0.78	3.91	2.0	0.004	0.65	0.0	0.05	16.48	0.00	2.558	6.64	3.74	4.7	95.3	0.0	-0.17	1.13	0.78	0.79	4.18	3237	412	3	0	0	0	0	logfile
✔	8X9B	38171	2025-05-22	2023-11-29	3.82	4.04	3.77	4.0	0.012	1.57	0.0	0.10	12.25	0.01	2.173	2.03	0.00	2.4	97.6	0.0	-3.01	0.62	0.79	2.41	4.0	0.003	0.67	0.0	0.04	16.01	0.00	2.209	6.37	3.54	3.6	96.4	0.0	-1.16	1.34	0.66	0.84	2.26	22600	2898	16	0	0	0	0	logfile
✔	8V4Y	42977	2025-05-27	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.006	0.65	0.0	0.05	24.09	0.00	1.890	2.24	0.76	4.4	95.4	0.2	1.47	1.51	0.89	0.88	3.38	29426	1219	12	294	3	0	13550	logfile
✔	8R8D	18999	2025-05-11	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.68	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.006	1.32	2.0	0.05	15.02	0.01	1.601	8.63	2.07	5.0	95.0	0.0	0.08	0.31	0.67	0.82	3.40	7062	920	14	0	12	18	0	logfile
✔	8R8K	19002	2025-05-09	2023-11-29	3.41	3.66	3.36	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.003	0.50	0.0	0.04	15.48	0.00	2.593	4.44	2.73	4.5	95.5	0.0	-0.18	0.28	0.59	0.85	2.55	4005	515	3	0	0	0	0	logfile
✘	8R8T	19009	2025-05-09	2023-11-29	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3256	418	2	0	1	0	0	logfile
✔	8V4L	42972	2025-05-18	2023-11-29	2.9	2.46	—	2.0	0.006	1.05	0.0	0.06	14.22	0.01	2.140	2.32	0.05	2.4	97.6	0.0	-1.75	0.65	0.79	3.24	2.1	0.004	0.67	0.0	0.04	17.19	0.00	1.841	8.30	2.66	2.6	97.4	0.0	0.57	1.86	0.73	0.85	3.19	17463	2230	11	0	13	0	0	logfile
✔	8V4M	42973	2025-05-18	2023-11-29	3.0	2.51	—	3.0	0.006	1.03	0.0	0.06	14.32	0.01	2.137	2.68	0.00	2.7	97.3	0.0	-1.91	0.65	0.79	2.78	2.0	0.004	0.73	0.0	0.05	17.21	0.01	1.835	8.85	1.91	2.7	97.3	0.0	0.44	1.50	0.72	0.85	3.18	17431	2227	11	0	13	0	0	logfile
✔	8V4K	42971	2025-05-19	2023-11-29	3.1	2.75	—	2.9	0.006	1.03	0.0	0.06	14.27	0.01	1.719	2.27	0.05	2.4	97.6	0.0	-1.97	0.71	0.83	2.97	2.9	0.003	0.61	0.0	0.04	16.08	0.00	1.834	5.86	1.23	2.1	97.9	0.0	0.73	0.69	0.76	0.88	3.02	17559	2229	10	0	17	0	0	logfile
✔	8V4Q	42975	2025-05-10	2023-11-29	2.71	2.89	2.70	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.003	0.51	0.0	0.04	16.86	0.00	2.486	1.01	2.25	1.9	98.1	0.0	0.36	0.93	0.58	0.89	3.19	5993	761	3	0	0	0	0	logfile
✔	8V4N	42974	2025-05-09	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	8R8Q	19006	2025-05-10	2023-11-29	4.08	4.33	4.00	4.3	0.003	0.69	0.0	0.04	13.96	0.00	2.210	7.88	0.17	7.9	92.1	0.0	-1.26	0.66	0.79	—	4.3	0.003	0.68	0.0	0.04	13.73	0.00	2.382	6.83	0.00	7.8	92.1	0.1	-0.79	0.41	0.66	0.79	—	5702	732	3	0	5	0	0	logfile

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