Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V4Y	42977	2025-05-27	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.006	0.65	0.0	0.05	24.09	0.00	1.890	2.24	0.76	4.4	95.4	0.2	1.47	1.51	0.89	0.88	3.38	29426	1219	12	294	3	0	13550	logfile
✔	8V45	42965	2025-05-20	2023-11-28	3.63	4.32	3.75	3.9	0.005	0.75	0.0	0.05	12.90	0.01	2.257	4.34	5.65	2.3	97.7	0.0	-1.11	0.84	0.78	1.39	3.9	0.003	0.66	0.0	0.04	14.23	0.00	2.386	9.16	2.70	2.1	97.9	0.0	1.59	1.54	0.86	0.82	1.21	19813	2485	12	0	4	0	0	logfile
✔	8V46	42966	2025-05-17	2023-11-28	3.09	3.67	3.19	3.5	0.004	0.59	0.0	0.05	11.45	0.00	2.079	3.85	2.58	2.1	97.9	0.0	-0.32	0.78	0.81	2.75	3.5	0.005	0.58	0.0	0.04	13.52	0.00	1.928	6.23	1.23	2.1	97.9	0.0	1.94	0.67	0.80	0.86	2.47	15632	1937	7	0	3	0	0	logfile
✔	8V49	42969	2025-05-15	2023-11-28	3.62	4.40	3.75	3.8	0.003	0.80	0.0	0.05	12.61	0.01	2.306	5.13	3.08	4.8	95.2	0.0	0.10	0.77	0.77	1.50	3.9	0.003	0.65	0.0	0.04	14.81	0.00	2.443	12.60	2.94	2.9	97.1	0.0	1.46	2.98	0.78	0.81	1.35	12834	1586	5	0	1	0	0	logfile
✔	8X8Q	38156	2025-05-10	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.56	0.0	0.04	15.51	0.00	2.613	7.70	0.95	1.1	98.9	0.0	0.46	0.35	0.84	0.86	3.56	4949	622	3	0	1	0	0	logfile
✔	8V3R	42951	2025-05-09	2023-11-28	3.4	3.53	3.28	3.5	0.013	1.58	0.0	0.09	12.46	0.01	1.701	1.56	0.24	2.2	97.8	0.0	-0.46	0.66	0.75	4.33	3.5	0.006	0.70	0.0	0.04	15.16	0.01	1.944	7.41	2.43	3.2	96.8	0.0	0.29	1.38	0.79	0.85	4.19	3953	503	4	0	5	0	0	logfile
✔	8V48	42968	2025-05-24	2023-11-28	3.68	4.24	3.84	3.7	0.006	0.73	0.0	0.05	11.86	0.01	2.235	4.98	2.49	2.7	97.3	0.0	-0.34	0.81	0.70	1.38	3.8	0.005	0.69	0.0	0.04	14.18	0.00	2.370	13.90	1.73	3.5	96.5	0.0	0.96	1.56	0.84	0.80	1.24	25334	3141	15	0	6	0	0	logfile
✔	8V47	42967	2025-05-21	2023-11-28	4.08	4.63	4.12	4.1	0.006	0.79	0.0	0.05	12.06	0.01	2.275	5.49	2.85	2.3	97.7	0.0	-0.21	0.83	0.77	—	4.1	0.004	0.58	0.0	0.04	12.03	0.00	2.362	12.08	0.04	3.1	96.9	0.0	1.36	1.58	0.84	0.81	—	20580	2548	11	0	4	0	0	logfile
✔	8X8R	38157	2025-05-14	2023-11-28	2.84	3.16	3.06	3.1	0.004	0.86	0.0	0.07	17.01	0.00	2.216	3.66	0.71	2.2	97.8	0.0	0.23	0.71	0.88	4.31	3.1	0.005	0.59	0.0	0.04	16.15	0.00	2.435	2.15	1.98	2.9	97.1	0.0	0.33	0.22	0.71	0.88	4.01	11870	1448	15	0	33	0	0	logfile
✔	8V3S	42952	2025-05-09	2023-11-28	3.6	3.74	3.40	3.7	0.013	1.52	0.0	0.09	12.86	0.01	1.978	2.51	0.00	3.9	96.1	0.0	-1.14	0.72	0.75	3.31	3.7	0.003	0.62	0.0	0.04	14.45	0.00	2.054	5.68	2.98	2.4	97.4	0.2	0.47	1.37	0.78	0.82	2.89	3909	501	4	0	5	0	0	logfile
✔	8V3Q	42950	2025-05-09	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	2.109	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.004	0.59	0.0	0.04	15.36	0.00	2.000	3.70	1.17	1.8	98.2	0.0	0.94	0.56	0.77	0.85	3.55	4030	503	4	0	9	0	0	logfile
✔	8V3L	42949	2025-05-14	2023-11-28	4.3	3.45	4.79	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	4.2	0.003	0.62	0.0	0.04	13.16	0.00	2.358	10.49	0.00	2.6	97.2	0.1	1.16	1.57	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8R87	18997	2025-05-19	2023-11-28	3.0	3.66	2.95	3.2	0.003	0.52	0.0	0.04	11.24	0.00	2.273	2.42	0.14	2.1	97.9	0.0	1.16	0.85	0.89	3.76	3.2	0.003	0.51	0.0	0.04	12.75	0.00	2.533	3.30	0.87	2.0	98.0	0.0	1.76	0.93	0.85	0.90	3.25	18372	2367	3	0	0	0	0	logfile
✔	8X85	38136	2025-05-16	2023-11-27	3.58	2.69	3.57	2.2	0.004	0.79	0.0	0.05	13.70	0.01	2.110	12.72	0.18	6.6	93.1	0.3	-1.14	0.70	0.69	1.67	2.1	0.004	0.77	0.0	0.05	14.82	0.00	2.442	10.95	2.47	6.3	93.4	0.2	-0.89	0.50	0.68	0.66	1.69	14490	1782	8	0	17	0	0	logfile
✘	8X8N	38150	2025-05-18	2023-11-27	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17358	1133	7	0	2	0	8589	logfile
✔	8X8o	38151	2025-05-18	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.005	0.59	0.0	0.05	14.79	0.00	2.495	1.58	1.48	5.9	94.1	0.0	-0.96	0.17	0.82	0.94	5.72	17682	2325	3	0	0	0	0	logfile
✔	8R7P	18987	2025-05-30	2023-11-27	2.53	2.22	2.47	2.5	0.003	0.46	0.0	0.04	14.57	0.00	2.469	2.82	0.59	1.4	98.6	0.0	4.48	0.33	0.64	4.41	2.5	0.002	0.49	0.0	0.04	14.70	0.00	2.511	2.26	0.80	1.0	99.0	0.0	3.68	0.48	0.60	0.86	4.65	33726	2076	24	0	0	90	16908	logfile
✔	8X8M	38149	2025-05-18	2023-11-27	2.37	2.78	2.36	2.7	0.002	0.49	0.0	0.04	14.22	0.00	2.178	2.38	1.48	4.1	95.9	0.0	-0.91	0.77	0.90	5.32	2.6	0.003	0.55	0.0	0.05	14.42	0.00	2.546	1.55	1.90	5.2	94.8	0.0	-0.89	0.22	0.83	0.93	5.56	17682	2325	3	0	0	0	0	logfile
✔	8X83	38134	2025-05-23	2023-11-27	2.8	2.86	2.93	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.004	0.49	0.0	0.03	15.94	0.00	2.473	3.51	0.76	2.4	97.6	0.0	3.05	0.52	0.58	0.79	3.09	24482	1520	12	0	6	4	12424	logfile
✔	8V3D	42946	2025-05-24	2023-11-27	2.95	3.20	3.00	3.2	0.003	0.51	0.0	0.04	17.45	0.00	1.999	6.13	2.59	3.0	97.0	0.0	2.24	0.63	0.82	3.08	3.2	0.003	0.53	0.0	0.04	17.61	0.00	2.382	4.49	2.81	2.4	97.6	0.0	2.84	0.28	0.63	0.82	2.78	25637	1578	5	0	1	0	13001	logfile

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