Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X83	38134	2025-05-23	2023-11-27	2.8	2.86	2.93	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.004	0.49	0.0	0.03	15.94	0.00	2.473	3.51	0.76	2.4	97.6	0.0	3.05	0.52	0.58	0.79	3.09	24482	1520	12	0	6	4	12424	logfile
✔	8X82	38133	2025-05-14	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.003	0.44	0.0	0.04	17.29	0.00	2.635	3.93	1.53	1.6	98.4	0.0	3.41	0.39	0.63	0.83	2.61	12004	1520	4	0	0	0	0	logfile
✔	8X8L	38148	2025-05-18	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.8	0.003	0.59	0.0	0.04	15.86	0.00	2.350	4.83	2.63	4.4	95.6	0.0	1.33	1.14	0.59	0.84	3.80	17555	1140	6	0	0	0	8704	logfile
✔	8V3D	42946	2025-05-24	2023-11-27	2.95	3.20	3.00	3.2	0.003	0.51	0.0	0.04	17.45	0.00	1.999	6.13	2.59	3.0	97.0	0.0	2.24	0.63	0.82	3.08	3.2	0.003	0.53	0.0	0.04	17.61	0.00	2.382	4.49	2.81	2.4	97.6	0.0	2.84	0.28	0.63	0.82	2.78	25637	1578	5	0	1	0	13001	logfile
✔	8X8o	38151	2025-05-18	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.005	0.59	0.0	0.05	14.79	0.00	2.495	1.58	1.48	5.9	94.1	0.0	-0.96	0.17	0.82	0.94	5.72	17682	2325	3	0	0	0	0	logfile
✔	8R7N	18984	2025-05-15	2023-11-26	3.4	4.11	3.43	3.5	0.006	0.77	0.0	0.04	21.13	0.00	2.108	18.05	0.26	6.1	93.8	0.2	-0.91	0.78	0.69	0.92	3.5	0.003	0.73	0.0	0.04	21.19	0.00	2.115	14.81	3.15	5.8	94.1	0.2	-0.58	0.51	0.79	0.70	1.19	13171	1324	13	114	0	0	0	logfile
✔	8V32	42941	2025-05-23	2023-11-26	3.01	2.21	3.11	2.0	0.003	0.60	0.0	0.04	20.85	0.00	1.959	9.62	1.43	3.9	96.1	0.0	0.64	0.78	0.79	2.07	1.9	0.004	0.58	0.0	0.04	20.61	0.00	1.899	8.34	3.31	3.6	96.4	0.0	1.00	0.34	0.78	0.80	2.04	24592	2822	20	82	16	2	0	logfile
✔	8X7W	38129	2025-05-22	2023-11-26	3.36	3.65	3.42	3.6	0.003	0.56	0.0	0.04	13.06	0.01	2.022	7.78	0.04	4.3	95.7	0.0	0.43	0.67	0.64	1.29	3.6	0.004	0.67	0.0	0.04	15.20	0.00	2.437	6.91	3.40	4.2	95.8	0.0	0.09	0.45	0.72	0.72	1.10	22389	2835	6	0	0	0	0	logfile
✔	8X7V	38128	2025-05-14	2023-11-26	3.01	3.44	3.18	3.4	0.003	0.65	0.0	0.04	13.39	0.01	2.074	7.37	0.08	2.7	97.3	0.0	0.16	0.68	0.73	2.43	3.4	0.003	0.62	0.0	0.04	16.07	0.00	2.516	6.57	2.67	3.1	96.9	0.0	0.67	1.19	0.62	0.71	1.77	11202	1418	3	0	0	0	0	logfile
✔	8X7T	38109	2025-05-26	2023-11-25	3.26	2.44	—	3.2	0.002	0.63	0.0	0.04	10.71	0.00	2.206	16.31	0.38	3.2	96.7	0.1	-3.29	0.78	0.69	1.97	3.2	0.003	0.60	0.0	0.04	14.17	0.00	2.489	9.13	1.32	3.2	96.8	0.0	-0.46	0.64	0.82	0.75	1.87	28329	3753	6	0	0	0	0	logfile
✔	8V2Z	42938	2025-05-16	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.003	0.59	0.0	0.04	14.93	0.00	2.070	3.38	0.89	2.9	97.1	0.0	1.71	1.54	0.75	0.88	2.92	14635	1860	10	0	10	0	0	logfile
✔	8V30	42939	2025-05-17	2023-11-25	2.54	3.42	2.59	3.1	0.009	0.95	10.0	0.05	14.97	0.01	1.900	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.0	0.006	0.70	0.0	0.05	14.24	0.00	1.904	4.07	0.63	3.7	96.3	0.0	1.42	0.28	0.75	0.89	3.87	14910	1890	20	0	15	0	0	logfile
✔	8X7U	38111	2025-05-27	2023-11-25	3.57	3.00	—	3.5	0.003	0.66	0.0	0.04	11.87	0.00	2.050	11.43	0.31	2.5	97.4	0.1	-3.75	0.80	0.74	1.42	3.5	0.004	0.71	1.0	0.04	14.39	0.00	1.964	11.14	1.98	3.2	96.7	0.0	-0.65	1.15	0.81	0.75	1.66	28832	3840	11	0	8	0	0	logfile
✔	8X7o	38105	2025-05-09	2023-11-24	3.5	3.62	3.46	3.7	0.019	1.48	0.0	0.08	11.60	0.01	2.280	17.38	0.00	9.4	90.6	0.0	-4.07	0.33	0.58	5.29	3.6	0.005	0.70	0.0	0.05	15.15	0.00	2.591	10.63	5.53	9.1	90.9	0.0	-3.51	1.99	0.47	0.87	3.11	3996	550	18	0	12	0	0	logfile
✔	8X7Q	38107	2025-05-09	2023-11-24	2.7	2.32	2.41	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.003	0.72	0.0	0.05	17.93	0.00	2.615	10.27	5.79	4.2	95.8	0.0	-3.46	2.16	0.49	0.86	2.95	3936	550	14	0	4	0	0	logfile
✔	8X7i	38099	2025-05-16	2023-11-24	3.27	3.99	3.28	3.0	0.006	0.61	0.0	0.04	25.49	0.00	2.093	11.61	1.85	3.9	96.0	0.1	1.53	0.93	0.87	2.22	3.0	0.004	0.64	0.0	0.04	26.48	0.00	2.089	10.46	1.50	2.9	97.1	0.0	1.84	0.59	0.93	0.88	1.13	14300	1061	14	294	2	0	0	logfile
✔	8X7K	38101	2025-05-16	2023-11-24	3.27	3.85	3.23	2.7	0.005	0.55	0.0	0.03	26.21	0.00	2.018	11.58	2.37	1.7	98.3	0.0	2.99	0.90	0.84	2.31	2.7	0.004	0.64	0.0	0.04	27.04	0.00	2.022	11.17	1.37	2.3	97.7	0.0	2.84	0.60	0.90	0.84	1.63	13387	954	13	286	2	0	0	logfile
✔	8R7H	18973	2025-05-16	2023-11-24	3.29	3.67	3.28	3.5	0.004	0.50	0.0	0.04	9.96	0.01	2.262	6.08	0.86	2.1	97.9	0.0	-1.80	0.90	0.85	2.72	3.2	0.003	0.59	0.0	0.04	12.91	0.00	2.479	5.59	1.65	3.2	96.8	0.0	1.12	0.56	0.91	0.89	2.70	14258	1850	4	0	0	0	0	logfile
✔	8X7F	38098	2025-05-14	2023-11-24	2.66	1.35	2.58	3.2	0.013	0.84	0.0	0.05	16.53	0.01	2.235	6.48	0.00	1.9	98.1	0.0	0.59	0.78	0.71	2.38	3.3	0.003	0.65	0.0	0.04	18.25	0.00	2.405	7.58	1.88	2.5	97.5	0.0	1.12	1.90	0.82	0.81	2.59	11596	1388	8	0	8	0	0	logfile
✔	8X7J	38100	2025-05-16	2023-11-24	3.39	4.10	3.41	2.9	0.003	0.52	0.0	0.03	25.85	0.00	1.882	10.74	1.73	2.1	97.9	0.0	2.58	0.90	0.81	2.21	2.9	0.005	0.62	0.0	0.04	26.58	0.00	2.009	11.46	1.86	2.7	97.3	0.0	2.12	1.25	0.91	0.85	1.58	13739	1018	14	288	2	0	0	logfile

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