Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X7B	38097	2025-05-09	2023-11-23	3.0	3.06	2.29	3.3	0.017	1.42	0.0	0.08	17.12	0.01	2.297	30.43	0.00	9.4	90.6	0.0	-4.07	0.39	0.50	4.60	3.3	0.004	0.67	0.0	0.05	16.98	0.00	2.568	11.28	2.11	6.8	93.2	0.0	-3.34	1.34	0.59	0.84	3.61	4020	550	16	0	12	0	0	logfile
✔	8V2o	42918	2025-05-16	2023-11-23	2.45	3.28	2.53	3.0	0.004	0.80	0.0	0.05	15.84	0.01	2.253	3.92	0.70	2.8	97.2	0.0	-1.34	0.76	0.89	3.74	3.0	0.002	0.59	0.0	0.04	14.53	0.00	2.011	4.61	0.83	2.8	97.2	0.0	1.49	0.29	0.75	0.88	3.88	14660	1860	10	0	10	0	0	logfile
✔	8R6U	18963	2025-05-15	2023-11-23	2.98	2.77	3.03	3.0	0.007	0.73	0.0	0.05	17.13	0.01	1.964	4.89	6.46	6.6	93.4	0.0	-1.04	0.74	0.87	3.08	3.0	0.003	0.57	0.0	0.04	17.51	0.00	2.016	5.08	2.25	4.9	95.1	0.0	0.20	1.25	0.73	0.85	2.36	13408	1566	6	43	1	0	0	logfile
✔	8X7A	38096	2025-05-17	2023-11-23	2.56	3.58	2.63	3.3	0.019	0.99	2.0	0.04	8.42	0.01	2.199	4.74	0.12	2.1	97.9	0.0	-0.63	0.67	0.71	2.35	3.3	0.005	0.65	0.0	0.04	14.69	0.00	2.292	7.94	1.49	3.9	96.1	0.0	1.18	1.25	0.65	0.80	2.64	15628	1044	6	0	1	0	7679	logfile
✔	8V28	42901	2025-05-14	2023-11-22	3.36	3.62	3.37	3.4	0.004	0.58	0.0	0.04	27.27	0.00	2.295	5.26	0.56	2.7	97.3	0.0	2.83	0.89	0.88	1.19	3.4	0.004	0.56	0.0	0.03	27.43	0.00	2.463	4.52	2.39	3.3	96.7	0.0	2.95	1.40	0.89	0.89	1.15	12659	845	11	290	0	0	0	logfile
✔	8V2B	42904	2025-05-14	2023-11-22	3.67	4.07	3.73	3.9	0.003	0.50	0.0	0.04	21.99	0.00	2.223	4.13	0.00	2.5	97.5	0.0	-2.26	0.79	0.76	1.50	3.8	0.002	0.64	0.0	0.04	14.71	0.00	2.516	5.36	1.51	3.4	96.6	0.0	-0.28	0.71	0.80	0.78	1.26	12049	1455	16	0	29	0	0	logfile
✔	8V29	42902	2025-05-15	2023-11-22	3.99	4.39	4.06	3.8	0.002	0.48	0.0	0.04	15.96	0.00	2.226	5.71	0.00	2.3	97.7	0.0	-2.01	0.73	0.60	0.91	3.9	0.003	0.65	0.0	0.04	13.82	0.00	2.496	8.55	1.74	3.6	96.4	0.0	-0.04	0.78	0.76	0.64	0.70	12457	1524	10	0	19	0	0	logfile
✔	8R6R	18959	2025-05-25	2023-11-22	3.89	4.26	3.91	3.9	0.003	0.51	0.0	0.04	16.20	0.00	1.966	4.83	0.00	3.7	96.3	0.0	-0.07	0.75	0.62	1.67	4.0	0.003	0.82	0.0	0.04	18.25	0.01	2.042	12.98	2.71	3.3	96.7	0.0	-0.12	3.48	0.82	0.81	1.34	27623	3323	10	84	3	0	0	logfile
✔	8V2C	42905	2025-05-10	2023-11-22	3.46	3.79	3.42	3.7	0.003	0.53	0.0	0.04	22.68	0.00	2.336	3.32	0.20	3.1	96.9	0.0	-1.76	0.70	0.83	1.65	3.6	0.003	0.70	0.0	0.04	15.42	0.00	2.513	4.10	2.36	5.2	94.8	0.0	0.48	1.02	0.70	0.86	2.12	4600	551	10	0	13	0	0	logfile
✔	8R6P	18956	2025-05-26	2023-11-22	3.16	3.73	3.16	3.3	0.002	0.50	0.0	0.04	16.26	0.00	1.998	3.10	0.00	1.9	98.1	0.0	1.26	0.87	0.80	2.72	3.3	0.003	0.57	0.0	0.04	17.84	0.00	2.024	4.98	1.48	2.9	97.1	0.0	1.30	1.06	0.91	0.88	2.25	28732	3458	11	85	3	0	0	logfile
✔	8V2A	42903	2025-05-10	2023-11-22	3.59	3.97	3.50	3.8	0.003	0.60	0.0	0.04	16.76	0.00	2.267	6.35	0.20	3.3	96.7	0.0	-1.69	0.73	0.77	1.22	3.7	0.003	0.70	0.0	0.04	14.41	0.00	2.510	7.13	2.43	3.7	96.3	0.0	0.56	0.59	0.74	0.79	1.36	4522	551	8	0	10	0	0	logfile
✔	8V2H	42914	2025-05-17	2023-11-22	3.1	3.07	3.07	3.0	0.002	0.46	0.0	0.04	13.74	0.00	2.253	4.40	0.00	3.4	96.5	0.0	1.11	0.69	0.85	2.59	3.0	0.003	0.60	0.0	0.04	16.15	0.00	2.299	6.34	1.77	3.5	96.5	0.0	1.23	0.43	0.70	0.88	1.64	16168	2028	17	0	12	12	0	logfile
✔	8V2G	42911	2025-05-17	2023-11-22	3.18	3.34	3.22	3.3	0.003	0.51	0.0	0.04	15.72	0.00	2.165	4.40	1.26	3.0	96.9	0.0	1.91	0.71	0.90	2.48	3.3	0.003	0.50	0.0	0.04	16.21	0.00	2.388	3.51	1.89	3.0	97.0	0.0	2.32	0.27	0.70	0.89	2.38	16163	2028	17	0	12	8	0	logfile
✔	8V2J	42916	2025-05-15	2023-11-22	2.9	3.13	2.84	3.1	0.006	0.95	0.0	0.05	16.66	0.01	1.970	2.78	0.42	3.0	97.0	0.0	0.06	0.58	0.72	3.19	3.1	0.003	0.62	0.0	0.04	18.92	0.00	2.029	7.71	3.32	2.6	97.4	0.0	0.55	0.73	0.71	0.84	2.93	13580	1732	8	2	4	0	0	logfile
✘	8V1Q	42887	2025-05-14	2023-11-21	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11914	1367	5	56	2	3	0	logfile
✔	8V26	42899	2025-05-14	2023-11-21	3.33	3.60	3.33	3.4	0.006	0.62	0.0	0.04	27.21	0.00	2.255	7.19	0.28	1.9	98.1	0.0	2.29	0.89	0.89	1.12	3.4	0.003	0.56	0.0	0.03	27.40	0.00	2.462	4.94	2.81	2.6	97.4	0.0	2.69	0.24	0.89	0.89	1.29	12689	849	11	290	0	0	0	logfile
✔	8V25	42898	2025-05-14	2023-11-21	3.32	3.58	3.32	3.3	0.004	0.60	0.0	0.04	27.35	0.00	2.287	6.50	0.42	3.0	97.0	0.0	2.59	0.90	0.89	1.48	3.3	0.003	0.55	0.0	0.03	27.30	0.00	2.544	6.03	2.66	3.2	96.8	0.0	2.90	0.29	0.90	0.89	0.99	12689	849	11	290	0	0	0	logfile
✔	8X6F	38087	2025-05-25	2023-11-21	3.7	3.32	3.71	3.6	0.005	0.69	1.0	0.05	17.83	0.00	2.210	9.63	0.69	2.2	97.8	0.0	0.99	0.59	0.67	1.19	3.5	0.008	0.80	0.0	0.05	19.60	0.01	2.397	12.13	3.96	4.6	95.4	0.0	-0.39	1.43	0.66	0.75	1.17	26982	3175	9	91	0	0	0	logfile
✔	8R68	18948	2025-05-09	2023-11-21	3.6	3.73	3.55	3.6	0.003	0.65	0.0	0.04	13.09	0.01	2.228	17.63	0.30	5.6	94.4	0.0	-1.70	0.53	0.52	1.77	3.7	0.003	0.74	0.0	0.04	15.62	0.00	2.578	12.64	1.79	7.4	92.6	0.0	-1.93	1.82	0.54	0.52	0.97	3241	391	1	0	0	0	0	logfile
✘	8X6G	38088	2025-05-25	2023-11-21	3.3	2.85	3.24	3.2	0.004	0.60	0.0	0.04	16.82	0.00	2.200	8.79	0.25	1.7	98.3	0.1	1.36	0.55	0.69	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27271	3232	10	81	0	0	0	logfile

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