Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V26	42899	2025-05-14	2023-11-21	3.33	3.60	3.33	3.4	0.006	0.62	0.0	0.04	27.21	0.00	2.255	7.19	0.28	1.9	98.1	0.0	2.29	0.89	0.89	1.12	3.4	0.003	0.56	0.0	0.03	27.40	0.00	2.462	4.94	2.81	2.6	97.4	0.0	2.69	0.24	0.89	0.89	1.29	12689	849	11	290	0	0	0	logfile
✔	8V24	42897	2025-05-20	2023-11-21	3.6	3.75	3.54	3.8	0.004	0.63	1.0	0.04	20.51	0.00	1.879	8.74	0.48	5.7	94.1	0.2	0.06	0.62	0.77	2.14	3.8	0.004	0.53	0.0	0.04	17.82	0.00	1.867	8.04	1.34	6.5	93.3	0.2	0.24	0.34	0.64	0.78	1.99	19652	1253	8	0	8	0	9601	logfile
✘	8V1R	42888	2025-05-14	2023-11-21	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11864	1355	5	56	6	3	0	logfile
✔	8V1S	42889	2025-05-14	2023-11-21	3.26	3.30	3.24	3.2	0.018	1.64	1.0	0.08	22.66	0.01	1.841	11.72	0.18	0.3	99.6	0.1	-4.48	0.70	0.70	2.44	3.2	0.004	0.79	0.0	0.05	21.94	0.01	2.039	15.07	3.46	6.2	93.8	0.0	-1.33	1.29	0.71	0.71	1.80	11889	1360	5	59	1	0	0	logfile
✔	8X6F	38087	2025-05-25	2023-11-21	3.7	3.32	3.71	3.6	0.005	0.69	1.0	0.05	17.83	0.00	2.210	9.63	0.69	2.2	97.8	0.0	0.99	0.59	0.67	1.19	3.5	0.008	0.80	0.0	0.05	19.60	0.01	2.397	12.13	3.96	4.6	95.4	0.0	-0.39	1.43	0.66	0.75	1.17	26982	3175	9	91	0	0	0	logfile
✔	8X63	38078	2025-05-09	2023-11-20	3.2	4.09	3.71	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.78	0.0	0.04	17.16	0.01	2.601	8.55	2.44	7.2	92.8	0.0	-0.27	0.79	0.31	0.49	1.25	2252	270	2	0	1	0	0	logfile
✔	8X5X	38074	2025-05-09	2023-11-20	3.5	3.67	4.07	3.8	0.004	0.78	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.76	0.0	0.04	17.45	0.00	2.625	10.53	4.74	4.5	95.5	0.0	1.17	0.84	0.44	0.56	0.92	2105	256	1	0	0	0	0	logfile
✔	8V1N	42886	2025-05-09	2023-11-20	3.0	3.17	1.84	3.5	0.004	0.76	0.0	0.05	19.55	0.00	2.237	14.70	3.21	3.6	96.4	0.0	-3.49	0.38	0.70	3.30	3.6	0.003	0.67	0.0	0.05	20.49	0.00	2.625	8.68	4.49	5.4	93.5	1.2	-2.20	0.45	0.39	0.71	3.18	1440	192	12	0	0	0	0	logfile
✔	8X61	38077	2025-05-10	2023-11-20	3.05	3.26	3.00	3.3	0.004	0.60	0.0	0.04	16.00	0.00	2.218	5.90	0.34	3.2	96.8	0.0	0.61	0.69	0.80	2.83	3.3	0.004	0.62	0.0	0.04	16.29	0.00	2.410	4.34	2.05	2.8	97.2	0.0	1.97	0.91	0.67	0.82	2.91	5737	756	6	0	2	0	0	logfile
✘	8R64	18946	2025-05-15	2023-11-20	3.2	3.36	3.33	3.3	0.002	0.49	0.0	0.05	11.85	0.00	1.940	4.62	0.29	1.4	98.6	0.0	2.70	0.83	0.85	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13429	1765	13	0	12	0	0	logfile
✔	8X5Y	38075	2025-05-09	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.003	0.75	0.0	0.04	17.15	0.00	2.621	9.94	1.61	6.0	94.0	0.0	0.10	0.29	0.32	0.52	1.06	2292	274	2	0	1	0	0	logfile
✔	8X64	38079	2025-05-09	2023-11-20	3.4	4.16	3.78	4.1	0.006	0.79	1.0	0.05	14.11	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	4.1	0.004	0.72	0.0	0.04	17.23	0.00	2.637	12.17	4.60	5.9	94.1	0.0	-0.16	1.15	0.41	0.60	1.59	2189	263	2	0	1	0	0	logfile
✔	8V12	42878	2025-05-11	2023-11-19	3.81	4.38	3.83	4.1	0.002	0.50	0.0	0.04	11.58	0.00	2.196	11.64	2.72	1.8	98.2	0.0	2.07	0.60	0.68	-0.08	4.1	0.003	0.80	0.0	0.05	14.93	0.00	2.448	16.23	3.51	3.0	97.0	0.0	1.65	0.96	0.62	0.77	0.30	7960	979	2	0	2	0	0	logfile
✔	8V0W	42872	2025-05-24	2023-11-17	3.3	3.47	3.30	3.5	0.005	0.90	0.0	0.06	14.32	0.01	2.236	3.46	0.00	7.8	92.2	0.0	-1.92	0.62	0.76	2.31	3.5	0.003	0.61	0.0	0.04	15.30	0.00	2.446	5.51	1.33	6.2	93.8	0.0	-0.64	0.37	0.73	0.84	2.17	24964	3123	12	0	41	0	0	logfile
✔	8X5H	38069	2025-05-09	2023-11-17	3.47	3.52	3.25	3.7	0.009	0.80	0.0	0.06	14.23	0.00	2.023	16.44	0.00	14.3	85.7	0.0	-5.99	0.31	0.84	4.70	3.7	0.004	0.68	0.0	0.05	15.61	0.00	2.523	6.91	3.70	10.8	89.2	0.0	-5.02	0.44	0.30	0.85	4.04	3258	405	3	0	0	0	0	logfile
✔	8X5i	38070	2025-05-18	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.003	0.62	0.0	0.04	16.20	0.00	2.041	4.52	1.85	4.3	95.7	0.0	0.34	0.53	0.75	0.88	3.13	17006	2063	8	0	8	0	0	logfile
✔	8V0L	42860	2025-05-24	2023-11-17	3.0	3.23	3.06	3.2	0.004	0.79	0.0	0.05	14.19	0.01	2.299	2.62	0.00	4.9	95.1	0.0	-1.01	0.67	0.81	2.68	3.3	0.005	0.63	0.0	0.05	15.19	0.00	2.415	4.13	1.81	4.9	95.1	0.0	-0.03	1.12	0.68	0.84	2.87	24849	3105	15	0	45	0	0	logfile
✔	8X5R	38073	2025-05-25	2023-11-17	3.72	4.01	3.78	3.8	0.006	0.88	0.0	0.06	20.78	0.01	2.203	17.05	1.06	9.2	90.3	0.5	-1.84	0.82	0.79	1.42	3.8	0.003	0.72	0.0	0.05	16.46	0.00	2.445	11.50	2.87	8.1	91.8	0.1	-1.59	1.15	0.83	0.80	1.48	26208	3258	27	0	63	0	0	logfile
✔	8X5E	38067	2025-05-09	2023-11-17	3.61	3.77	3.58	3.7	0.007	1.27	1.0	0.07	14.32	0.00	2.438	11.64	2.53	7.8	92.2	0.0	-1.30	0.51	0.81	2.40	3.7	0.003	0.64	0.0	0.04	15.46	0.00	2.400	4.87	6.65	4.9	95.1	0.0	1.55	1.43	0.51	0.81	2.50	3216	390	2	0	8	0	0	logfile
✔	8V0M	42861	2025-05-24	2023-11-17	3.2	3.44	3.28	3.5	0.008	0.97	0.0	0.05	14.11	0.01	1.974	3.26	0.00	5.3	94.7	0.0	-1.63	0.66	0.78	2.37	3.5	0.003	0.72	1.0	0.05	14.83	0.00	2.094	4.13	0.81	4.5	95.5	0.0	-0.53	0.36	0.66	0.80	2.16	24835	3105	15	0	44	0	0	logfile

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