Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X5Q	38072	2025-05-25	2023-11-17	3.47	3.68	3.46	3.6	0.006	0.83	0.0	0.05	20.55	0.01	2.198	14.63	1.21	9.2	90.4	0.4	-1.75	0.79	0.81	1.75	3.6	0.003	0.70	0.0	0.05	16.11	0.00	2.478	9.91	3.09	7.9	92.1	0.0	-1.34	0.53	0.79	0.82	1.76	26208	3258	27	0	63	0	0	logfile
✔	8V0R	42867	2025-05-24	2023-11-17	3.0	3.22	3.05	3.3	0.004	0.75	0.0	0.05	13.57	0.01	2.244	2.74	0.00	4.3	95.7	0.1	-1.40	0.72	0.83	3.15	3.3	0.004	0.59	0.0	0.05	15.10	0.00	2.447	4.75	1.62	3.9	96.1	0.1	-0.09	1.15	0.72	0.85	3.01	24903	3123	9	0	36	0	0	logfile
✔	8V0G	42854	2025-05-11	2023-11-17	3.11	3.81	3.35	3.6	0.006	0.95	0.0	0.04	10.81	0.01	2.417	25.65	0.88	4.4	95.5	0.1	-1.87	0.67	0.82	2.89	3.7	0.003	0.66	0.0	0.04	14.91	0.00	2.367	10.77	1.88	1.5	98.5	0.0	2.34	1.36	0.62	0.84	1.65	8106	985	2	0	3	0	0	logfile
✔	8V0Q	42866	2025-05-24	2023-11-17	3.9	4.16	3.93	4.0	0.004	0.85	0.0	0.06	14.49	0.01	2.279	3.47	0.00	4.7	95.3	0.0	-1.79	0.78	0.79	1.36	4.0	0.003	0.62	0.0	0.04	15.24	0.00	2.470	5.86	1.52	4.5	95.5	0.0	-0.26	1.18	0.79	0.80	1.23	24795	3105	12	0	42	0	0	logfile
✔	8X5E	38067	2025-05-09	2023-11-17	3.61	3.77	3.58	3.7	0.007	1.27	1.0	0.07	14.32	0.00	2.438	11.64	2.53	7.8	92.2	0.0	-1.30	0.51	0.81	2.40	3.7	0.003	0.64	0.0	0.04	15.46	0.00	2.400	4.87	6.65	4.9	95.1	0.0	1.55	1.43	0.51	0.81	2.50	3216	390	2	0	8	0	0	logfile
✔	8X5H	38069	2025-05-09	2023-11-17	3.47	3.52	3.25	3.7	0.009	0.80	0.0	0.06	14.23	0.00	2.023	16.44	0.00	14.3	85.7	0.0	-5.99	0.31	0.84	4.70	3.7	0.004	0.68	0.0	0.05	15.61	0.00	2.523	6.91	3.70	10.8	89.2	0.0	-5.02	0.44	0.30	0.85	4.04	3258	405	3	0	0	0	0	logfile
✔	8V0N	42862	2025-05-23	2023-11-17	3.4	3.60	3.40	3.6	0.004	0.82	0.0	0.06	14.36	0.01	2.286	2.85	0.00	5.5	94.5	0.0	-1.17	0.69	0.80	2.19	3.6	0.003	0.56	0.0	0.04	15.03	0.00	2.424	3.91	1.16	4.5	95.5	0.0	0.07	0.32	0.69	0.80	1.98	24690	3084	15	0	45	0	0	logfile
✔	8X5D	38066	2025-05-19	2023-11-17	3.1	3.23	3.05	3.2	0.004	0.65	0.0	0.04	15.44	0.01	2.263	3.62	5.46	4.0	96.0	0.0	-5.02	0.78	0.87	3.03	3.1	0.005	0.68	0.0	0.04	16.53	0.00	2.448	4.68	2.57	4.9	95.1	0.0	-1.17	0.48	0.80	0.90	2.57	18477	2225	13	47	0	0	0	logfile
✔	8V0X	42873	2025-05-24	2023-11-17	3.3	3.51	3.35	3.5	0.004	0.81	0.0	0.05	14.55	0.01	2.304	3.00	0.00	5.8	94.2	0.0	-1.76	0.67	0.77	2.58	3.5	0.003	0.58	0.0	0.04	15.42	0.00	2.462	4.83	1.66	4.0	96.0	0.0	-0.44	0.40	0.70	0.82	2.48	24796	3123	6	0	29	0	0	logfile
✔	8V0U	42870	2025-05-24	2023-11-17	3.3	3.50	3.28	3.5	0.005	0.77	0.0	0.05	14.48	0.01	2.280	3.18	0.00	4.7	95.2	0.0	-1.64	0.69	0.79	2.64	3.5	0.005	0.59	0.0	0.05	15.29	0.00	2.494	4.18	1.04	4.7	95.3	0.0	-0.44	0.32	0.73	0.84	2.69	24811	3105	12	0	39	0	0	logfile
✔	8V0M	42861	2025-05-24	2023-11-17	3.2	3.44	3.28	3.5	0.008	0.97	0.0	0.05	14.11	0.01	1.974	3.26	0.00	5.3	94.7	0.0	-1.63	0.66	0.78	2.37	3.5	0.003	0.72	1.0	0.05	14.83	0.00	2.094	4.13	0.81	4.5	95.5	0.0	-0.53	0.36	0.66	0.80	2.16	24835	3105	15	0	44	0	0	logfile
✔	8V0o	42863	2025-05-24	2023-11-17	3.3	3.45	3.28	3.5	0.005	0.80	1.0	0.06	14.09	0.01	2.264	2.93	0.00	4.7	95.3	0.1	-1.71	0.69	0.81	3.21	3.5	0.003	0.57	0.0	0.04	14.91	0.00	2.491	3.76	1.19	4.5	95.4	0.0	-0.18	0.33	0.70	0.83	2.92	24879	3105	15	0	48	0	0	logfile
✔	8X5R	38073	2025-05-25	2023-11-17	3.72	4.01	3.78	3.8	0.006	0.88	0.0	0.06	20.78	0.01	2.203	17.05	1.06	9.2	90.3	0.5	-1.84	0.82	0.79	1.42	3.8	0.003	0.72	0.0	0.05	16.46	0.00	2.445	11.50	2.87	8.1	91.8	0.1	-1.59	1.15	0.83	0.80	1.48	26208	3258	27	0	63	0	0	logfile
✔	8X51	38058	2025-05-11	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.003	0.68	0.0	0.04	20.64	0.00	2.354	5.60	2.58	6.5	93.1	0.3	-0.57	1.56	0.61	0.79	2.77	8095	885	6	42	2	0	0	logfile
✔	8X53	38060	2025-05-13	2023-11-16	3.0	3.15	2.98	3.2	0.017	1.42	12.0	0.08	14.53	0.01	1.597	5.63	0.53	4.8	95.1	0.1	-3.49	0.35	0.54	2.55	3.2	0.003	0.65	0.0	0.04	14.42	0.00	2.392	6.54	1.84	3.0	97.0	0.1	0.88	0.60	0.58	0.79	2.46	10947	1334	14	0	26	0	0	logfile
✘	8R57	18903	2025-05-24	2023-11-16	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	1878	29	458	28	357	0	logfile
✔	8UZW	42845	2025-05-26	2023-11-16	2.69	3.11	2.90	3.1	0.012	0.86	0.0	0.04	15.67	0.01	2.141	9.07	0.71	2.8	97.2	0.0	0.78	0.65	0.81	2.60	3.1	0.005	0.62	0.0	0.04	16.35	0.00	2.321	8.42	1.61	2.3	97.7	0.0	0.70	0.28	0.61	0.79	2.42	28258	3713	10	0	0	0	0	logfile
✔	8X50	38057	2025-05-25	2023-11-16	3.82	4.35	4.09	4.0	0.004	0.85	0.0	0.06	21.38	0.01	2.087	15.86	0.32	7.9	92.0	0.1	-1.40	0.82	0.80	1.09	4.0	0.003	0.75	0.0	0.05	16.66	0.00	2.429	10.54	3.17	7.7	92.3	0.1	-1.13	1.28	0.83	0.83	1.36	25828	3192	23	0	65	0	0	logfile
✔	8X56	38064	2025-05-24	2023-11-16	3.93	4.27	4.00	4.1	0.004	0.87	0.0	0.06	21.40	0.01	2.064	15.93	0.58	7.0	92.8	0.2	-1.65	0.83	0.80	0.99	4.1	0.003	0.74	0.0	0.05	16.74	0.00	2.412	10.47	3.53	7.5	92.4	0.1	-1.34	1.16	0.84	0.81	1.08	25749	3189	21	0	60	0	0	logfile
✔	8X4Z	38056	2025-05-24	2023-11-16	3.49	3.81	3.53	3.8	0.005	0.86	0.0	0.06	21.37	0.01	2.094	12.13	0.50	7.7	92.3	0.1	-1.62	0.78	0.82	2.04	3.8	0.003	0.69	0.0	0.05	16.43	0.00	2.485	7.79	3.10	6.4	93.5	0.1	-0.86	0.48	0.78	0.83	1.90	25839	3192	24	0	66	0	0	logfile

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