Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8X52	38059	2025-05-13	2023-11-16	2.9	3.11	2.86	3.3	0.017	1.46	7.0	0.07	14.34	0.01	1.598	7.57	0.88	4.7	95.2	0.2	-3.49	0.49	0.63	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10907	1334	14	0	25	0	0	logfile
✔	8X4Z	38056	2025-05-24	2023-11-16	3.49	3.81	3.53	3.8	0.005	0.86	0.0	0.06	21.37	0.01	2.094	12.13	0.50	7.7	92.3	0.1	-1.62	0.78	0.82	2.04	3.8	0.003	0.69	0.0	0.05	16.43	0.00	2.485	7.79	3.10	6.4	93.5	0.1	-0.86	0.48	0.78	0.83	1.90	25839	3192	24	0	66	0	0	logfile
✔	8X55	38063	2025-05-24	2023-11-16	3.75	4.07	3.86	3.9	0.005	0.85	0.0	0.06	20.86	0.01	2.075	13.49	0.40	7.4	92.5	0.1	-1.54	0.80	0.80	1.47	3.9	0.004	0.75	0.0	0.05	16.68	0.00	2.372	9.88	3.39	7.5	92.5	0.1	-1.13	1.21	0.81	0.82	1.48	25749	3189	21	0	60	0	0	logfile
✔	8X56	38064	2025-05-24	2023-11-16	3.93	4.27	4.00	4.1	0.004	0.87	0.0	0.06	21.40	0.01	2.064	15.93	0.58	7.0	92.8	0.2	-1.65	0.83	0.80	0.99	4.1	0.003	0.74	0.0	0.05	16.74	0.00	2.412	10.47	3.53	7.5	92.4	0.1	-1.34	1.16	0.84	0.81	1.08	25749	3189	21	0	60	0	0	logfile
✔	8R50	18889	2025-05-28	2023-11-15	3.1	3.35	3.19	3.2	0.003	0.52	0.0	0.04	17.30	0.00	2.186	9.71	0.16	8.0	92.0	0.1	-1.17	0.82	0.83	2.96	3.2	0.004	0.63	0.0	0.05	16.92	0.00	2.368	8.44	4.47	7.6	92.2	0.1	-1.05	0.33	0.83	0.86	3.13	29752	3778	12	0	32	0	0	logfile
✔	8X4H	38049	2025-05-24	2023-11-15	3.65	4.00	3.78	3.8	0.006	0.89	0.0	0.06	20.99	0.00	2.078	16.16	0.68	8.7	91.2	0.1	-1.87	0.80	0.80	2.11	3.8	0.003	0.71	0.0	0.05	16.03	0.00	2.441	10.17	2.45	7.0	93.0	0.0	-1.44	0.50	0.80	0.80	1.71	25824	3189	24	0	66	0	0	logfile
✔	8R51	18890	2025-05-16	2023-11-15	3.2	3.29	3.12	3.3	0.004	0.54	0.0	0.05	16.46	0.00	2.103	6.56	0.57	5.9	94.1	0.0	-0.39	0.77	0.88	3.90	3.3	0.002	0.53	0.0	0.04	16.58	0.00	2.353	5.76	3.89	4.8	95.2	0.0	-0.42	0.26	0.78	0.89	3.60	13978	1793	6	0	13	0	0	logfile
✔	8R54	18891	2025-05-17	2023-11-15	3.5	3.54	3.52	3.5	0.006	0.66	1.0	0.05	18.75	0.00	2.176	9.13	0.35	8.8	91.2	0.1	-1.09	0.83	0.85	2.67	3.5	0.004	0.84	1.0	0.05	17.22	0.00	2.423	7.04	3.72	7.1	92.9	0.0	-0.83	0.22	0.82	0.85	2.59	15900	1982	11	0	24	0	0	logfile
✔	8X43	38041	2025-05-27	2023-11-15	3.0	3.27	3.12	3.3	0.005	0.56	0.0	0.03	17.00	0.00	1.965	12.43	0.38	3.8	96.2	0.0	2.23	0.54	0.70	2.13	3.2	0.004	0.59	0.0	0.03	17.74	0.00	2.396	8.65	1.96	3.4	96.6	0.0	2.37	0.85	0.60	0.76	1.92	30164	1880	12	0	4	0	14984	logfile
✔	8UZA	42837	2025-05-13	2023-11-14	3.17	3.37	3.20	3.3	0.004	0.55	0.0	0.04	21.34	0.00	2.122	7.07	0.25	4.8	95.2	0.0	-0.15	0.77	0.84	2.56	3.3	0.005	0.58	0.0	0.04	21.42	0.00	2.267	5.51	2.34	5.4	94.6	0.0	0.02	0.21	0.77	0.84	2.09	11072	910	4	171	0	0	0	logfile
✔	8UZ2	42831	2025-05-18	2023-11-14	3.18	3.48	3.24	3.4	0.004	0.56	0.0	0.04	13.16	0.00	1.999	3.90	0.00	4.4	95.6	0.0	0.06	0.62	0.80	2.70	3.4	0.003	0.58	0.0	0.04	15.63	0.00	2.082	6.66	1.32	3.3	96.7	0.0	0.72	0.53	0.66	0.83	2.77	17474	2246	15	0	10	0	0	logfile
✔	8UZC	42839	2025-05-10	2023-11-14	3.8	4.02	3.70	4.0	0.004	0.71	0.0	0.04	16.35	0.01	1.992	14.20	3.45	9.7	90.0	0.2	-2.81	0.65	0.69	2.14	4.0	0.004	0.66	0.0	0.04	16.82	0.01	2.402	12.30	3.45	11.6	88.4	0.0	-3.07	0.44	0.64	0.69	1.43	6831	443	3	0	0	0	3367	logfile
✔	8UZB	42838	2025-05-13	2023-11-14	2.63	2.93	2.72	2.9	0.003	0.53	0.0	0.04	20.26	0.00	2.147	5.73	0.00	3.7	96.3	0.0	0.49	0.67	0.78	2.83	2.9	0.005	0.63	0.0	0.04	21.32	0.00	2.462	4.89	2.10	4.1	95.9	0.0	0.56	0.32	0.65	0.79	2.66	10882	910	4	162	0	0	0	logfile
✔	8UY8	42795	2025-05-16	2023-11-13	3.03	3.33	3.10	3.3	0.004	0.62	0.0	0.04	12.76	0.00	2.009	7.35	0.07	3.7	96.2	0.1	0.55	0.69	0.88	3.55	3.3	0.003	0.56	0.0	0.04	14.83	0.00	1.988	5.50	1.02	3.0	96.9	0.1	1.33	0.96	0.69	0.89	3.45	13927	1794	6	0	6	150	0	logfile
✔	8R4C	18885	2025-05-09	2023-11-13	3.55	2.98	3.50	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.004	0.71	0.0	0.04	18.43	0.01	2.547	9.97	9.30	8.9	91.1	0.0	-2.97	0.22	0.63	0.76	1.63	4027	553	2	0	0	0	0	logfile
✔	8UYA	42797	2025-05-16	2023-11-13	3.72	3.83	3.73	3.7	0.002	0.54	0.0	0.04	13.96	0.00	1.970	6.51	0.00	7.3	92.7	0.0	-1.36	0.74	0.86	2.46	3.8	0.002	0.55	0.0	0.04	15.39	0.00	2.002	5.00	1.42	6.3	93.7	0.0	-0.33	0.37	0.74	0.86	1.89	13902	1796	6	0	10	14	0	logfile
✔	8UY9	42796	2025-05-10	2023-11-13	3.65	3.80	3.70	3.7	0.004	0.73	2.0	0.05	14.68	0.00	1.921	13.81	0.38	2.8	97.2	0.0	0.72	0.66	0.84	2.06	3.7	0.004	0.66	0.0	0.04	15.60	0.00	1.918	7.56	5.10	2.7	97.3	0.0	1.05	0.91	0.66	0.84	1.46	5982	859	2	0	1	0	0	logfile
✔	8UY4	42792	2025-05-22	2023-11-13	3.08	3.86	3.11	3.5	0.004	0.59	0.0	0.04	16.41	0.00	1.930	8.85	1.55	5.4	94.3	0.3	-0.62	0.85	0.75	3.48	3.5	0.002	0.51	0.0	0.04	16.34	0.00	2.380	4.11	0.86	6.1	93.9	0.0	-0.43	1.12	0.85	0.76	3.88	21959	1346	5	0	108	0	10495	logfile
✔	8R4D	18886	2025-05-09	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.62	0.0	0.04	16.81	0.00	2.503	10.88	3.57	9.1	90.2	0.7	-2.20	0.40	0.52	0.58	2.25	3573	478	3	0	1	0	0	logfile
✔	8R4B	18884	2025-05-11	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.003	0.73	0.0	0.04	17.26	0.00	2.428	12.70	4.05	8.5	91.2	0.3	-2.39	1.57	0.77	0.71	1.53	7600	1031	4	0	1	0	0	logfile

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