Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UY4	42792	2025-05-22	2023-11-13	3.08	3.86	3.11	3.5	0.004	0.59	0.0	0.04	16.41	0.00	1.930	8.85	1.55	5.4	94.3	0.3	-0.62	0.85	0.75	3.48	3.5	0.002	0.51	0.0	0.04	16.34	0.00	2.380	4.11	0.86	6.1	93.9	0.0	-0.43	1.12	0.85	0.76	3.88	21959	1346	5	0	108	0	10495	logfile
✔	8R4C	18885	2025-05-09	2023-11-13	3.55	2.98	3.50	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.004	0.71	0.0	0.04	18.43	0.01	2.547	9.97	9.30	8.9	91.1	0.0	-2.97	0.22	0.63	0.76	1.63	4027	553	2	0	0	0	0	logfile
✔	8R47	18881	2025-05-09	2023-11-13	2.25	2.05	2.09	2.3	0.013	2.05	0.0	0.10	15.67	0.02	2.468	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.31	0.00	2.533	7.75	1.01	3.2	96.8	0.0	-3.88	1.04	0.52	0.82	5.99	3780	498	6	0	0	0	0	logfile
✔	8UY6	42793	2025-05-23	2023-11-13	1.9	2.64	1.98	2.3	0.003	0.53	0.0	0.04	17.15	0.00	2.025	8.37	1.00	3.6	96.1	0.3	0.86	0.83	0.93	5.48	2.3	0.003	0.58	0.0	0.04	16.92	0.00	2.453	3.15	1.19	1.8	98.0	0.3	1.91	0.29	0.81	0.93	5.07	22616	2928	24	0	8	0	0	logfile
✔	8UYF	42804	2025-05-10	2023-11-13	2.75	3.09	2.40	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.57	0.0	0.04	13.79	0.00	2.481	6.03	1.53	1.8	98.2	0.0	1.67	0.99	0.75	0.86	3.62	6460	801	2	0	0	0	0	logfile
✔	8R4A	18883	2025-05-12	2023-11-13	2.8	2.04	2.70	2.7	0.013	2.16	0.0	0.10	15.07	0.01	2.451	5.51	0.00	6.2	93.8	0.0	-4.27	0.78	0.80	3.91	2.7	0.003	0.79	0.0	0.05	17.24	0.00	2.557	10.64	4.81	5.1	94.9	0.0	-4.27	0.60	0.81	0.85	3.77	9225	1170	9	0	0	0	0	logfile
✔	8UY9	42796	2025-05-10	2023-11-13	3.65	3.80	3.70	3.7	0.004	0.73	2.0	0.05	14.68	0.00	1.921	13.81	0.38	2.8	97.2	0.0	0.72	0.66	0.84	2.06	3.7	0.004	0.66	0.0	0.04	15.60	0.00	1.918	7.56	5.10	2.7	97.3	0.0	1.05	0.91	0.66	0.84	1.46	5982	859	2	0	1	0	0	logfile
✔	8UYB	42798	2025-05-16	2023-11-13	3.87	4.18	3.89	3.9	0.002	0.51	0.0	0.04	12.23	0.00	2.054	8.53	0.00	4.2	95.8	0.0	1.15	0.70	0.85	1.29	3.9	0.003	0.67	0.0	0.04	14.13	0.00	2.000	8.67	1.43	4.0	96.0	0.0	1.29	1.00	0.71	0.86	0.93	13836	1796	4	0	8	0	0	logfile
✔	8X3K	38038	2025-05-09	2023-11-13	2.98	3.37	2.99	3.4	0.008	0.90	0.0	0.05	13.54	0.01	2.238	8.90	1.34	3.5	96.5	0.0	-2.22	0.52	0.78	1.32	3.4	0.004	0.70	0.0	0.04	15.89	0.00	2.580	6.63	4.03	1.9	98.1	0.0	1.82	0.41	0.52	0.79	1.32	2797	373	2	0	1	0	0	logfile
✔	8UY8	42795	2025-05-16	2023-11-13	3.03	3.33	3.10	3.3	0.004	0.62	0.0	0.04	12.76	0.00	2.009	7.35	0.07	3.7	96.2	0.1	0.55	0.69	0.88	3.55	3.3	0.003	0.56	0.0	0.04	14.83	0.00	1.988	5.50	1.02	3.0	96.9	0.1	1.33	0.96	0.69	0.89	3.45	13927	1794	6	0	6	150	0	logfile
✔	8UY0	42791	2025-05-11	2023-11-11	3.2	3.52	3.23	3.7	0.004	0.55	0.0	0.04	13.39	0.00	2.236	4.62	0.11	1.9	98.1	0.0	0.91	0.55	0.74	2.67	3.7	0.003	0.56	0.0	0.04	15.56	0.00	2.414	3.57	1.24	2.1	97.9	0.0	1.54	0.37	0.56	0.77	2.51	8121	1031	6	0	1	0	0	logfile
✔	8UXV	42786	2025-05-11	2023-11-11	3.2	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.02	0.00	2.094	3.18	0.00	2.6	97.4	0.0	0.80	0.72	0.86	2.93	3.4	0.006	0.66	0.0	0.05	15.79	0.00	2.552	2.56	1.87	4.1	95.9	0.0	0.58	0.91	0.74	0.89	2.59	8065	1041	5	0	0	0	0	logfile
✔	8X30	38024	2025-05-27	2023-11-10	4.3	3.88	5.94	2.1	0.012	1.44	0.0	0.08	25.51	0.01	2.160	15.54	3.38	13.3	86.5	0.1	-5.37	0.82	0.73	—	2.1	0.004	0.96	0.0	0.05	23.89	0.01	2.330	20.84	0.06	9.3	90.7	0.0	-2.71	1.03	0.83	0.76	—	21579	1904	17	292	0	0	0	logfile
✔	8X32	38026	2025-05-18	2023-11-10	4.4	3.53	5.77	2.2	0.012	1.47	1.0	0.08	26.16	0.01	2.194	15.76	2.09	12.0	88.0	0.0	-4.82	0.72	0.58	—	2.2	0.004	0.88	0.0	0.05	25.32	0.01	2.127	23.07	0.00	8.6	91.4	0.0	-3.33	1.41	0.72	0.56	—	16944	1350	14	292	0	0	0	logfile
✔	8X2X	38021	2025-05-18	2023-11-10	3.8	3.22	3.94	1.9	0.008	1.13	0.0	0.06	25.56	0.01	2.260	8.42	1.34	8.3	91.7	0.0	-4.90	0.82	0.70	0.52	1.4	0.005	0.98	0.0	0.05	25.97	0.01	2.308	21.93	3.93	6.7	93.3	0.0	-2.56	1.70	0.85	0.77	0.84	16939	1349	14	292	0	0	0	logfile
✔	8X2Z	38023	2025-05-21	2023-11-10	3.9	3.21	4.05	1.7	0.007	1.28	0.0	0.07	26.28	0.01	2.207	7.27	4.25	10.9	88.9	0.2	-5.58	0.80	0.69	0.46	1.5	0.005	1.01	0.0	0.05	25.99	0.01	2.405	19.20	5.09	9.8	90.2	0.0	-2.92	2.28	0.85	0.76	0.58	16972	1353	14	292	0	0	0	logfile
✔	8X2Y	38022	2025-05-21	2023-11-10	4.1	3.25	4.17	1.9	0.006	0.99	0.0	0.05	25.18	0.01	2.284	7.04	0.80	7.7	92.2	0.1	-4.42	0.80	0.69	—	1.4	0.004	0.81	0.0	0.04	24.44	0.01	2.367	15.10	0.00	6.1	93.9	0.0	-1.75	1.69	0.84	0.74	—	17396	1403	14	292	0	0	0	logfile
✔	8UXT	42775	2025-05-21	2023-11-10	1.77	2.38	1.83	2.2	0.003	0.48	0.0	0.04	16.63	0.00	2.053	4.81	1.45	4.5	95.0	0.5	1.15	0.83	0.85	6.41	2.2	0.003	0.56	0.0	0.04	16.63	0.00	2.212	3.54	1.11	5.4	94.1	0.5	0.54	0.29	0.78	0.84	6.24	21989	1414	1	0	0	0	10719	logfile
✔	8R3Z	18878	2025-05-10	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.003	0.58	0.0	0.04	17.67	0.00	1.946	11.23	3.00	3.1	96.9	0.0	0.26	0.51	0.82	0.78	1.53	6389	755	3	6	1	0	0	logfile
✔	8R3Y	18877	2025-05-21	2023-11-10	3.68	3.66	3.56	3.6	0.013	1.98	11.0	0.11	15.13	0.02	2.527	0.45	3.01	7.4	92.3	0.3	-1.59	0.64	0.69	2.61	3.6	0.003	0.68	0.0	0.04	16.33	0.00	2.345	7.16	3.10	6.5	93.5	0.0	-1.40	1.82	0.66	0.71	2.22	20107	1293	4	0	1	0	9975	logfile

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