Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X32	38026	2025-05-18	2023-11-10	4.4	3.53	5.77	2.2	0.012	1.47	1.0	0.08	26.16	0.01	2.194	15.76	2.09	12.0	88.0	0.0	-4.82	0.72	0.58	—	2.2	0.004	0.88	0.0	0.05	25.32	0.01	2.127	23.07	0.00	8.6	91.4	0.0	-3.33	1.41	0.72	0.56	—	16944	1350	14	292	0	0	0	logfile
✔	8R3G	18864	2025-05-14	2023-11-09	4.4	4.64	4.34	4.3	0.013	1.54	0.0	0.10	19.04	0.01	2.243	11.87	0.18	1.7	98.3	0.0	-1.19	0.73	0.52	—	4.3	0.004	0.69	0.0	0.04	18.45	0.00	2.362	17.80	0.00	3.2	96.8	0.0	0.25	1.55	0.86	0.78	—	11985	1340	6	82	0	0	0	logfile
✔	8R3K	18871	2025-05-16	2023-11-09	3.43	3.17	3.32	3.3	0.003	0.54	0.0	0.04	18.62	0.00	1.888	7.20	0.00	2.4	97.6	0.0	1.23	0.77	0.86	2.39	3.3	0.003	0.55	0.0	0.04	18.82	0.00	1.915	6.85	2.80	2.9	97.1	0.0	1.09	0.93	0.77	0.86	2.10	14767	1717	7	41	3	0	0	logfile
✔	8X2i	38011	2025-05-19	2023-11-09	2.5	2.63	2.52	2.7	0.010	0.93	0.0	0.06	19.08	0.01	1.057	14.15	8.96	5.6	94.2	0.2	-2.37	0.62	0.67	2.62	2.6	0.003	0.63	0.0	0.05	18.75	0.00	2.419	6.38	3.07	3.8	96.2	0.0	0.20	0.58	0.61	0.65	2.24	18645	2303	2	0	1	0	0	logfile
✔	8X2H	38010	2025-05-20	2023-11-09	2.9	3.07	2.89	3.0	0.006	0.85	1.0	0.05	20.16	0.00	2.037	16.30	13.38	8.7	91.1	0.2	-4.22	0.60	0.58	0.86	3.0	0.004	0.74	0.0	0.05	19.47	0.00	2.369	10.10	5.33	7.7	92.2	0.1	-1.70	1.29	0.63	0.63	0.80	19088	2363	2	0	1	0	0	logfile
✔	8UX9	42719	2025-05-16	2023-11-09	3.2	2.33	3.15	3.0	0.003	0.50	0.0	0.05	16.21	0.00	2.231	8.56	0.34	5.8	94.1	0.1	0.65	0.77	0.79	3.80	3.0	0.004	0.51	0.0	0.05	16.07	0.00	2.391	6.71	2.70	4.0	95.9	0.1	1.22	0.22	0.77	0.80	3.92	14247	1104	5	0	2	0	6464	logfile
✔	8X2K	38015	2025-05-12	2023-11-09	3.03	3.27	3.08	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.005	0.90	0.0	0.04	15.67	0.00	2.379	3.77	1.53	3.3	96.6	0.1	0.35	0.34	0.68	0.84	2.63	8570	1111	6	0	1	2	0	logfile
✔	8X2M	38017	2025-05-13	2023-11-09	3.31	4.05	3.32	3.5	0.003	0.63	0.0	0.04	16.67	0.00	2.137	9.92	0.51	5.0	95.0	0.0	-1.93	0.80	0.73	1.96	3.6	0.003	0.74	0.0	0.04	16.85	0.00	2.441	9.54	3.04	5.9	94.1	0.0	-1.35	1.32	0.82	0.80	2.15	10545	1306	6	0	0	0	0	logfile
✔	8R3M	18873	2025-05-27	2023-11-09	3.49	3.90	3.48	3.5	0.003	0.49	0.0	0.04	15.53	0.00	1.955	4.08	0.00	3.0	97.0	0.0	1.16	0.86	0.80	2.11	3.6	0.003	0.61	0.0	0.04	17.10	0.00	1.966	5.84	1.48	3.1	96.9	0.0	0.83	1.08	0.91	0.89	2.01	29417	3682	11	53	3	0	0	logfile
✔	8X2L	38016	2025-05-11	2023-11-09	2.99	2.32	2.96	3.0	0.010	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	3.0	0.005	0.69	0.0	0.04	15.91	0.00	2.234	11.43	3.22	3.6	96.4	0.0	0.35	0.66	0.77	0.81	3.02	7099	885	6	0	9	1	0	logfile
✔	8X1N	37997	2025-05-10	2023-11-08	3.31	3.46	3.36	3.5	0.004	0.61	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.005	1.15	1.0	0.04	16.31	0.00	2.302	2.95	2.72	3.6	96.4	0.0	2.33	0.29	0.66	0.81	1.44	4763	591	3	0	8	0	0	logfile
✔	8UX1	42685	2025-05-17	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.004	0.57	0.0	0.04	26.12	0.00	2.560	5.10	1.72	2.4	97.6	0.1	1.63	1.07	0.86	0.86	3.63	16395	1332	12	291	0	0	0	logfile
✔	8R33	18859	2025-05-11	2023-11-08	2.29	2.45	2.29	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.003	0.55	0.0	0.04	17.25	0.00	2.577	6.53	0.88	2.0	98.0	0.0	2.61	0.28	0.66	0.85	4.20	8066	978	6	0	8	328	0	logfile
✔	8R34	18860	2025-05-11	2023-11-08	2.62	2.82	2.61	2.9	0.004	0.65	0.0	0.04	19.66	0.00	2.167	7.50	2.41	2.3	97.7	0.0	0.34	0.62	0.83	2.93	2.9	0.003	0.57	0.0	0.04	18.56	0.00	2.289	5.50	1.65	2.2	97.8	0.0	1.84	0.85	0.61	0.83	2.88	7762	970	6	0	14	62	0	logfile
✔	8R35	18861	2025-05-11	2023-11-08	3.12	3.46	3.17	3.4	0.003	0.55	0.0	0.04	16.59	0.00	2.214	6.87	0.90	2.4	97.6	0.0	1.44	0.68	0.87	1.80	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.567	5.85	3.23	2.4	97.6	0.0	2.20	0.26	0.66	0.87	1.80	7150	953	2	0	0	0	0	logfile
✔	8UWS	42680	2025-05-18	2023-11-08	2.65	2.19	2.71	2.1	0.005	0.73	0.0	0.05	16.68	0.01	1.576	6.62	2.74	4.5	95.2	0.3	-0.72	0.82	0.83	4.68	2.1	0.004	0.80	1.0	0.05	17.41	0.01	2.095	7.20	4.01	4.2	95.6	0.2	-0.17	0.76	0.81	0.83	4.56	17137	2133	8	0	4	0	0	logfile
✔	8R2N	18852	2025-05-30	2023-11-07	3.1	3.39	3.19	3.3	0.005	0.78	0.0	0.05	16.66	0.00	0.173	11.96	3.25	4.0	96.0	0.0	-2.92	0.69	0.89	4.32	3.3	0.003	0.57	0.0	0.04	16.73	0.00	2.259	6.72	2.43	2.0	98.0	0.0	0.31	0.30	0.63	0.88	3.55	33237	4236	36	0	24	549	0	logfile
✔	8X1i	37996	2025-05-10	2023-11-07	4.0	4.14	2.16	4.1	0.012	1.87	1.0	0.10	15.72	0.01	1.891	0.00	2.93	5.2	94.8	0.0	-2.05	0.41	0.68	—	4.1	0.003	0.68	0.0	0.04	15.07	0.00	1.809	5.93	0.98	5.7	94.3	0.0	-0.18	1.92	0.43	0.77	—	5722	369	2	0	2	0	2840	logfile
✔	8X0W	37983	2025-05-11	2023-11-06	3.1	4.21	3.15	3.7	0.003	0.62	0.0	0.04	21.59	0.00	2.229	8.75	0.51	5.4	94.6	0.0	1.39	0.67	0.86	1.45	3.7	0.003	0.70	0.0	0.04	16.42	0.00	2.477	7.21	2.28	4.7	95.3	0.0	1.62	0.29	0.67	0.87	1.51	7368	935	7	0	8	0	0	logfile
✔	8X1B	37989	2025-05-10	2023-11-06	2.59	2.29	2.63	2.1	0.003	0.50	0.0	0.04	16.59	0.00	2.236	5.35	1.48	3.4	96.6	0.0	0.52	0.84	0.84	3.42	2.1	0.003	0.53	0.0	0.05	16.76	0.00	2.602	5.45	0.74	3.4	96.6	0.0	0.58	0.90	0.83	0.83	3.14	5106	658	1	0	0	0	0	logfile

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