Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X16	37985	2025-05-12	2023-11-06	3.29	3.58	3.36	3.7	0.005	0.53	0.0	0.04	8.10	0.00	2.203	8.34	0.32	2.0	97.9	0.1	-1.18	0.56	0.60	1.26	3.6	0.003	0.69	0.0	0.04	14.73	0.00	2.501	10.35	2.99	3.4	96.6	0.0	0.57	1.16	0.63	0.79	1.57	8751	1126	6	0	1	0	0	logfile
✔	8X17	37986	2025-05-12	2023-11-06	3.19	3.42	3.20	3.4	0.005	0.56	0.0	0.04	12.62	0.00	2.053	3.79	0.32	1.6	98.4	0.0	-0.96	0.62	0.78	2.23	3.4	0.003	0.56	0.0	0.04	15.30	0.00	2.523	6.09	1.92	2.7	97.3	0.0	1.02	1.05	0.62	0.84	2.37	8753	1127	6	0	1	0	0	logfile
✔	8R2i	18848	2025-05-20	2023-11-06	2.9	3.54	2.94	3.3	0.026	1.62	0.0	0.09	21.20	0.01	2.210	12.01	0.00	3.3	96.7	0.0	1.58	0.75	0.83	3.31	3.3	0.003	0.88	0.0	0.04	16.14	0.00	2.030	9.07	0.90	3.2	96.8	0.0	1.85	0.34	0.72	0.88	3.02	18054	1923	21	0	58	5	0	logfile
✔	8UWC	42661	2025-05-11	2023-11-06	2.27	2.89	2.21	2.7	0.008	0.89	0.0	0.05	15.70	0.01	1.906	13.81	1.67	5.4	94.6	0.0	-1.61	0.72	0.69	2.89	2.7	0.004	0.66	0.0	0.05	16.44	0.00	2.343	7.81	2.15	4.1	95.9	0.0	-0.31	0.82	0.70	0.72	2.85	7767	494	2	0	1	97	3821	logfile
✔	8UWL	42676	2025-05-12	2023-11-06	2.8	2.30	—	2.9	0.013	1.71	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.62	0.0	0.04	16.35	0.00	2.564	2.29	2.41	2.5	97.5	0.0	1.59	1.05	0.83	0.85	3.72	8626	1123	6	0	1	0	0	logfile
✘	8UW3	42637	2025-05-14	2023-11-06	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12005	1265	4	73	1	0	0	logfile
✔	8R2H	18842	2025-05-14	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.003	0.59	0.0	0.04	14.01	0.00	1.936	9.25	1.57	2.3	97.7	0.0	0.13	0.39	0.75	0.72	3.11	11484	1394	4	0	4	0	0	logfile
✔	8X0W	37983	2025-05-11	2023-11-06	3.1	4.21	3.15	3.7	0.003	0.62	0.0	0.04	21.59	0.00	2.229	8.75	0.51	5.4	94.6	0.0	1.39	0.67	0.86	1.45	3.7	0.003	0.70	0.0	0.04	16.42	0.00	2.477	7.21	2.28	4.7	95.3	0.0	1.62	0.29	0.67	0.87	1.51	7368	935	7	0	8	0	0	logfile
✔	8UW1	42636	2025-05-18	2023-11-05	2.88	3.37	2.98	3.1	0.008	0.73	0.0	0.05	27.27	0.00	2.273	3.06	0.00	2.4	97.6	0.0	0.97	0.83	0.82	2.55	3.1	0.004	0.57	0.0	0.03	27.68	0.00	2.491	4.25	0.93	2.2	97.8	0.0	2.61	0.57	0.86	0.90	3.03	12164	783	11	292	0	0	0	logfile
✔	8X0G	37978	2025-05-14	2023-11-04	3.0	3.25	2.86	3.2	0.007	0.87	0.0	0.06	17.33	0.01	2.251	10.31	0.76	7.9	91.7	0.4	-1.70	0.71	0.86	2.78	3.2	0.003	0.66	0.0	0.04	16.77	0.00	2.547	7.41	2.57	6.0	94.0	0.0	-0.53	0.38	0.73	0.87	2.55	12129	1530	6	0	4	31	0	logfile
✔	8UVU	42629	2025-05-14	2023-11-04	3.0	3.23	2.97	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.003	0.62	0.0	0.04	16.29	0.00	2.448	8.40	2.50	5.1	94.9	0.0	2.35	0.26	0.64	0.82	2.96	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2025-05-14	2023-11-04	2.9	3.16	2.83	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.004	0.57	0.0	0.04	17.17	0.00	2.575	8.79	2.51	3.8	96.2	0.0	3.02	0.39	0.67	0.84	1.83	12104	1544	4	0	0	0	0	logfile
✔	8X0L	37981	2025-05-23	2023-11-04	3.5	2.50	3.52	2.2	0.004	0.74	0.0	0.05	16.76	0.01	2.094	8.71	1.04	3.6	96.4	0.0	-0.60	0.42	0.78	2.60	2.2	0.003	0.67	0.0	0.04	16.80	0.00	2.192	5.87	4.62	3.3	96.7	0.0	-0.44	0.40	0.41	0.78	2.61	24555	3165	24	0	18	0	0	logfile
✔	8X0H	37979	2025-05-14	2023-11-04	4.1	4.27	3.92	4.1	0.004	0.69	0.0	0.05	14.99	0.00	2.051	17.13	0.00	10.8	89.1	0.1	-1.72	0.68	0.74	—	4.1	0.004	0.70	0.0	0.04	14.22	0.00	2.535	13.84	0.07	9.4	90.5	0.1	-1.41	0.33	0.68	0.73	—	12317	1558	4	0	4	0	0	logfile
✔	8X0K	37980	2025-05-30	2023-11-04	3.5	2.58	3.57	2.2	0.004	0.75	0.0	0.05	17.18	0.01	2.058	10.41	0.73	4.2	95.7	0.0	-0.30	0.51	0.78	2.37	2.2	0.005	0.74	0.0	0.05	17.14	0.01	2.169	7.82	4.89	4.9	95.1	0.0	-0.38	0.35	0.51	0.79	2.68	32740	4220	32	0	24	0	0	logfile
✔	8X0M	37982	2025-05-23	2023-11-04	3.5	2.62	3.64	3.4	0.004	0.72	1.0	0.05	16.79	0.01	2.146	9.45	0.68	4.6	95.4	0.0	-0.18	0.49	0.77	1.96	2.3	0.005	0.77	0.0	0.05	17.07	0.01	2.228	9.09	3.62	5.2	94.8	0.0	-0.37	1.17	0.50	0.78	2.27	24274	3128	22	0	17	0	0	logfile
✔	8X0E	37976	2025-05-14	2023-11-04	3.4	3.82	3.30	3.5	0.007	1.00	0.0	0.06	16.10	0.01	2.191	9.40	1.29	8.0	91.8	0.2	-1.21	0.72	0.84	2.10	3.5	0.003	0.69	0.0	0.04	15.53	0.00	2.567	7.17	2.50	6.6	93.4	0.0	-0.58	0.39	0.73	0.86	1.77	12086	1530	4	0	4	0	0	logfile
✔	8X06	37970	2025-05-10	2023-11-03	3.24	3.88	3.24	3.6	0.002	0.58	0.0	0.04	18.50	0.00	2.261	7.83	0.25	3.8	96.2	0.0	-0.94	0.77	0.76	1.37	3.6	0.003	0.62	0.0	0.04	18.33	0.00	2.533	7.04	3.95	5.8	94.2	0.0	-1.53	1.13	0.79	0.84	1.98	7053	869	4	0	0	0	0	logfile
✔	8R2D	18839	2025-05-19	2023-11-03	3.9	4.17	3.98	4.2	0.007	0.73	0.0	0.04	15.08	0.00	1.943	14.71	0.00	7.0	93.0	0.0	-3.71	0.73	0.77	1.16	4.2	0.003	0.69	0.0	0.04	16.60	0.00	2.164	9.91	1.77	4.1	95.9	0.0	-0.39	1.42	0.72	0.77	0.84	18276	2342	5	0	2	0	0	logfile
✔	8UVi	42621	2025-05-11	2023-11-03	2.53	2.73	2.54	2.8	0.004	0.75	4.0	0.05	14.60	0.01	2.093	9.69	0.72	2.1	97.9	0.0	1.41	0.60	0.80	2.95	2.8	0.003	0.66	0.0	0.04	14.73	0.01	2.264	10.45	2.99	1.4	98.6	0.0	2.31	5.05	0.62	0.84	2.63	8212	994	4	0	22	0	0	logfile

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